ERS3769391
SRA accession
abomasal lymph node
cell type
sheep
common name
CH (Spanish Churra Sheep)
derived from
Adult Churra sheep abomasal lymph node transcriptome high-quality variants 7 - High-quality variants ( variants detected by both GATK and samtools) obtained from abomasal lymph node transcriptome of 12 adult churra sheep (6 resistant and 6 susceptible) subjected to an experimental infection with T. circumcincta and merged into a single dataset
description
Spain
geographic location (country and/or sea)
Castilla y Leon
geographic location (region and locality)
Ovis aries
http://purl.obolibrary.org/obo/NCBITaxon_9940
organism
Ovis aries
http://purl.obolibrary.org/obo/NCBITaxon_9940
scientific name
Female
http://purl.obolibrary.org/obo/PATO_0000383
sex
ALN (abomasal lymph node )
subject
In this project the RNA-seq technology was exploited to analyze the transcriptome of target tissues affected by the Teladorsagia circumcincta infection in two groups (6 resistsant and 6 susceptible) of adult ewes showing different statuses against gastrointestinal nematode (GIN) infection with the aim of identifying genes and variants linked to GIN infection resistance in sheep.
submission description
GSB-1218
submission identifier
Analysis of mucosal and abomasal lymphnode transcriptome for the identification of genes involved in nematode resistance gastrointestinal tract in adult sheep.
submission title