ERS4203998
SRA accession
cultivar_sample9
description
Glycine max
http://purl.obolibrary.org/obo/NCBITaxon_3847
organism
Glycine max
http://purl.obolibrary.org/obo/NCBITaxon_3847
scientific name
This project was conducted to investigate selection signatures in soybean subgroups. 112 Glycine soja and 133 Glycine max accessions were re-sequenced, and numerous variants for the 245 accessions were obtained through variant calling process using GATK. Then, to avoid as false-positive variants as much possible, variant-quality-filtering and allele-frequency-filtering processes were conducted to the obtained variants. Finally, 9,650,073 bi-allelic SNP variants with minor allele frequency > 1% were identified for the 245 soybean accessions and utilized to this project.
submission description
GSB-5570
submission identifier
Bi-allelic SNP markers of 133 cultivar and 112 wild soybean samples through whole-genome sequencing
submission title