e78e0a80-98af-11e7-9eae-000e1e0af2dc
External Id
SAMN07722431
External Id
BioCI
INSDC center name
2017-09-29T00:00:00Z
INSDC first public
2023-09-01T17:25:22.703Z
INSDC last update
SRS18770685
INSDC secondary accession
live
INSDC status
Plant
NCBI submission model
Plant.1.0
NCBI submission package
SRS18770685
SRA accession
7 days old
age
Linda Hanley-Bowdoin, linda_hanley-bowdoin@ncsu.edu
biomaterial provider
Emily Wheeler
collected by
2016-03
collection date
Arabidopsis thaliana Col-0 undifferentiated cells
description
Undifferentiated cell culture
dev stage
Col-0
http://www.ebi.ac.uk/efo/EFO_0005148
ecotype
Col-0
http://www.ebi.ac.uk/efo/EFO_0005148
genotype
USA: Raleigh, NC
geo loc name
Col-0 cell culture grown in Gamborgs B5 basal medium and on a rotary shaker at 160 rpm under constant light at 23C. The cells were subcultured every 7 days with a 1:10 (inoculum:fresh medium) dilution, as described in Lee et al, 2010.
growth_protocol
Illumina NextSeq 500
http://www.ebi.ac.uk/efo/EFO_0009173
instrument model
Paired
library layout
A. thaliana Col-0, cell culture, H3K5ac ChIP, Input reference
library name
ChIP
http://www.ebi.ac.uk/efo/EFO_0002692
library selection
genomic
http://www.ebi.ac.uk/efo/EFO_0008479
library source
ChIP-Seq
http://www.ebi.ac.uk/efo/EFO_0002692
library strategy
Arabidopsis thaliana
http://purl.obolibrary.org/obo/NCBITaxon_3702
organism
Arabidopsis thaliana
http://purl.obolibrary.org/obo/NCBITaxon_3702
organism
Arabidopsis thaliana Col-0, cell culture, H3K5ac ChIP Input reference
sample name
Arabidopsis thaliana Col-0, 7-day split, cell culture, H3K5ac ChIP Input reference
sample title
Cell culture
http://purl.obolibrary.org/obo/BTO_0000214
sample type
23 C
temp
Undifferentiated cell culture
tissue
Arabidopsis thaliana Col-0, 7-day split, cell culture, H3K5ac ChIP Input reference
title
Arabidopsis thaliana Col-0, cell culture, H3K5ac ChIP, Input reference
title
16 hours, post 7-day split
treatment