no
16S recovered
Anvi'o v6.0 (using Prokka v1.14.3)
16S recovery software
SAMN13287983
External Id
GNS Science
INSDC center name
2020-05-01T00:00:00Z
INSDC first public
2023-10-11T21:07:25.901Z
INSDC last update
live
INSDC status
MIMAG.water
NCBI submission model
MIMAG.water.6.0
NCBI submission package
ERS16644974
SRA accession
metagenome-assembled genome
analysis project type
Medium
http://purl.obolibrary.org/obo/NCIT_C48164
assembly quality
Megahit v.1.1.13
assembly software
kmer+coverage
bin parameters
Anvi'o v6.0 (using CONCOCT v1.1.0)
binning software
2018/2019
collection date
82.8947368421052
completeness score
Anvi'o v6.0
completeness software
0
contamination score
16300
contig L50
Anvi'o v6.0
decontamination software
0-25cm
http://purl.obolibrary.org/obo/UO_0000015
depth
This BioSample is a metagenomic assembly obtained from the marine sediment metagenome BioSamples: SAMN12673430,SAMN12673432,SAMN12673436,SAMN12673456, SAMN12673457, and SAMN12673458
derived-from
Keywords: GSC:MIxS;MIMAG:6.0
description
-1974m
http://www.ebi.ac.uk/efo/EFO_0006768
elev
marine cold seep biome [ENVO:01000127] | marine bathyal zone biome [ENVO:01000026] | marine benthic biome [ENVO:01000024]
env_broad_scale
cold seep [ENVO:01000263] | marine cold seep biome [ENVO:01000127] |
env_local_scale
marine sediment [ENVO:03000033]
env_medium
1
environmental sample
New Zealand: Hikurangi Margin
geo loc name
GLR72
isolate
Glendhu Ridge methane seep
isolation source
41.77033333 S 176.0835 E
lat lon
marine sediment metagenome
metagenome source
1
metagenomic
Metagenome-assembled genome from metagenomes SRR10375097-9 and SRR10097245-7
note
127
number of contigs
Candidatus Nanohaloarchaea archaeon
http://purl.obolibrary.org/obo/NCBITaxon_2594798
organism
no
reassembly post binning
0.109338630562465
relative coverage Anaerobic (SRR10097246)
0.858649251704722
relative coverage Anoxic (SRR10375098)
0.0179112179687876
relative coverage Infiltration (SRR10097247)
0.0109065962255089
relative coverage Low pH (SRR10097245)
0.00319430353851509
relative coverage Oxic (SRR10375099)
0
relative coverage Reference (SRR10375097)
metagenomic assembly
sample-type
multi-marker approach (GTDBTk)
taxa id
Metagenome-assembled genome GLR72
title
1262827
total assembly size