0.6333333333333333
Collection_time
3:12:00 PM
Collection_time
SAMN25976468
External Id
CFSANSMP000113709
External Id
CFSAN
INSDC center name
2022-02-15T00:00:00Z
INSDC first public
2023-08-31T10:17:25.767Z
INSDC last update
SRS12011757
INSDC secondary accession
live
INSDC status
SARS-CoV-2: wastewater surveillance
NCBI submission model
SARS-CoV-2.wwsurv.1.0
NCBI submission package
SRS12011757
SRA accession
FDA Center for Food Safety and Applied Nutrition
collected by
2022-02-01
collection date
MOB
collection_site_id
4L
collection_volume
peg precipitation + ultracentrifugation
concentration_method
MOB grab 9:32am
description
Murine norovirus
extraction_control
qiagen rneasy kit
extraction_method
USA: Alabama
geo loc name
68250974.8
instantaneous_flow
wastewater
isolation source
wastewater metagenome
http://purl.obolibrary.org/obo/NCBITaxon_527639
organism
public health surveillance community-level
purpose_of_ww_sampling
no quality control issues identified
quality_control_details
no quality control issues identified
quality_control_determination
no quality control issues identified
quality_control_issues
CFSAN Wastewater Analysis Pipeline (C-WAP)
quality_control_method
not collected
sample_processing
not collected
sample_processing_details
not collected
sample_processing_id
FDA Center for Food Safety and Applied Nutrition
sequenced by
SARS-CoV-2: wastewater surveillance sample from wastewater metagenome
title
crAssphage
ww_endogenous_control_1
not collected
ww_endogenous_control_1_concentration
RT-qPCR Detection of Process Controls (Murine noroviurs and crAssphage) from Wastewater using AB 7500 (protocols.io)
ww_endogenous_control_1_protocol
not collected
ww_endogenous_control_2
not collected
ww_endogenous_control_2_conc
not collected
ww_endogenous_control_2_protocol
not collected
ww_endogenous_control_2_units
not collected
ww_flow
8
ww_industrial_effluent_percent
6.35
ww_ph
125030
ww_population
EPA Echo DMR
ww_population_source
Bar screen (2)
ww_pre_treatment
not collected
ww_primary_sludge_retention_time
not collected
ww_processing_protocol
0
ww_sample_duration
raw wastewater
ww_sample_matrix
900
ww_sample_salinity
wastewater treatment plant
ww_sample_site
grab
ww_sample_type
SARS-CoV-2
ww_surv_target_1
560
ww_surv_target_1_conc
Ct values
ww_surv_target_1_conc_unit
N (N1)
ww_surv_target_1_gene
yes
ww_surv_target_1_known_present
RT-qPCR Detection of SARS-CoV-2 from Wastewater Using the AB 7500 (protocols.io)
ww_surv_target_1_protocol
SARS-CoV-2
ww_surv_target_2
440
ww_surv_target_2_conc
Ct values
ww_surv_target_2_conc_unit
N (N2)
ww_surv_target_2_gene
yes
ww_surv_target_2_known_present
RT-qPCR Detection of SARS-CoV-2 from Wastewater Using the AB 7500 (protocols.io)
ww_surv_target_2_protocol
not collected
ww_surveillance_system_sample_id
19
ww_temperature
not collected
ww_total_suspended_solids