1.018
A260/A230
2.095
A260/A280
1
Architectural_Changes
1
DNA extraction batch
2021-12-27T00:00:00
DNA extraction date
1
Epithelial_Damage
SAMN32411078
External Id
control
Group
University of Maine
INSDC center name
2023-10-30T00:00:00Z
INSDC first public
2023-10-30T21:46:06.124Z
INSDC last update
SRS16360485
INSDC secondary accession
live
INSDC status
1
Infiltration_of_mononuclear_cells
8.194361269629967
Lipcalin_ng_per_g_feces_day0
270.5694843016115
Lipcalin_ng_per_g_feces_day10
843.0960726664912
Lipcalin_ng_per_g_feces_day16
1R
Mouse ID
Metagenome or environmental
NCBI submission model
Metagenome.environmental.1.0
NCBI submission package
10.741
Nucleic Acid(ng/uL)
1
PMA batch
2021-10-15T00:00:00
PMA date
sample divided in half for extraction and for archiving at -80C
PMA notes
1
Polymorphonuclear_Cells_in_LP
0
Polymorphonuclear_cells_in_Epithelium
1
Presence_of_Erosion_or_Ulcers
SRS16360485
SRA accession
distal_colon
Sample location
1
Sequencing_batch
female
Sex
1
Trial Number
2021-10-15
collection_date
USA: Burlington, Vermont
geo_loc_name
Mus musculus
host
intestines
isolation_source
44.4759 N 73.2121 W
lat_lon
mouse gut metagenome
http://purl.obolibrary.org/obo/NCBITaxon_410661
organism
anaerobe
rel_to_oxygen
surgical removal of organ and sampling with sterile tools
samp_collect_device
After euthanasia, digesta (lumen contents) microbial community samples were collected from the ileum, cecum, proximal colon, and distal colon for PMA-pretreatment to preclude later amplicifation of relic/dead DNA, then samples underwent DNA extraction and community sequencing.
samp_mat_process
1 cm2 square surface area
samp_size
IL10_mouse_model_gut_bacterial_community
title