SAMN30263890
External Id
Institute for Integrative Toxicology, Michigan State University
INSDC center name
2023-10-12T00:00:00Z
INSDC first public
2023-10-12T04:30:35.923Z
INSDC last update
SRS14617638
INSDC secondary accession
live
INSDC status
Generic
NCBI submission model
Generic.1.0
NCBI submission package
SRS14617638
SRA accession
male
Sex
7
acclimation period
UO_0000033
acclimation period_unit
day
acclimation period_unit_label
Yes
ad lib_feeding
4;Not Applicable
administration interval
UO_0000033;NCIT_C48660
administration interval_unit
day;Not Applicable
administration interval_unit_label
7;Not Applicable
administration number
XCO_0000581;ENVO_02000047
administration route
oral gavage;animal feed
administration route_ontology_label
0.1;Not Applicable
administration volume
UO_0000098;NCIT_C48660
administration volume_unit
milliliter;Not Applicable
administration volume_unit_label
64
age
UO_0000033
age unit
day
age unit_label
35
average vivarium_humidity
UO_0000187
average vivarium_humidity_unit
percent
average vivarium_humidity_unit_label
23
average vivarium_temperature
UO_0000027
average vivarium_temperature_unit
degree celsius
average vivarium_temperature_unit_label
ALPHA-dri (Shepherd Specialty Papers)
bedding
Charles Rivers Laboratories
biomaterial supplier
Innovive cage
cage type
1746-01-6;79902-63-9
cas number
missing
collection_date
GO_0009636
disease
response to toxic substance
disease ontology_label
30;0
dose
EFO_0002899;EFO_0002930
dose unit
microgram per kilogram;milligram per kilogram per day
dose unit_label
GO_0005634
enrichment cell_type
nucleus
enrichment cell_type_ontology_label
DAPI
enrichment facs_markers
fluorescence-activated cell sorting
enrichment method
NCIT_C90369
euthanasia method
Carbon dioxide euthanasia
euthanasia method_ontology_label
8640
feed catalog_no
Harlan Teklad 22/5 Rodent Diet 8640
feed description
Harlan Teklad 22/5 Rodent Diet 8640
feed name
Harlan Teklad
feed source
C12H4Cl4O2;C25H38O5
formula
missing
geo_loc_name
TCDD - Chow
group name
EFO_0009922
library preparation_protocol
10x 3' v3
library preparation_protocol_ontology_label
0.508333333333333
light cycle
https://doi.org/10.25504/FAIRsharing.wYScsE
metadata template_url
NCIT_C14424
mouse strain
C57BL/6
mouse strain_ontology_label
UBERON_0002107
organ
liver
organ ontology_label
Mus musculus
http://purl.obolibrary.org/obo/NCBITaxon_10090
organism
Snap Frozen
preservation method
EFO_0008637
sequencing instrument_manufacturer_model
Illumina NovaSeq 6000
sequencing instrument_manufacturer_model_ontology_label
Clc1cc2Oc3cc(Cl)c(Cl)cc3Oc2cc1Cl;CCC(C)(C)C(=O)O[C@H]1C[C@@H](C)C=C2C=C[C@H](C)[C@H](CC[C@@H]3C[C@@H](O)CC(=O)O3)[C@@H]12
smile string
liver
source_name
NCBITAXON_10090
species
Mus musculus
species ontology_label
28
time point
UO_0000033
time point_unit
day
time point_unit_label
liver
tissue
TCDD - Chow Replicate 2
title
CHEBI_28119;CHEBI_9150
toxic substance
D-404N;PHR1438
toxic substance_catalog_number
060712KC;NA
toxic substance_lot
321.96976;418.27192
toxic substance_molecular_weight
2,3,7,8-tetrachlorodibenzodioxine;simvastatin
toxic substance_ontology_label
99.8;98.9
toxic substance_purity
Room temperature;4C
toxic substance_storage
Accustandard;Sigma-aldrich
toxic substance_vendor
NCIT_C66537;animal feed
vehicle substance
sesame oil;animal feed
vehicle substance_ontology_label
Aquavive water (Innovive)
water