SAMN33399599
External Id
CFSANSMP000124134
External Id
FDA
INSDC center name
2023-02-21T00:00:00Z
INSDC first public
2023-08-31T10:24:52.506Z
INSDC last update
SRS16854451
INSDC secondary accession
live
INSDC status
SARS-CoV-2: wastewater surveillance
NCBI submission model
SARS-CoV-2.wwsurv.1.0
NCBI submission package
PRJNA757447
ProjectAccession
SRS16854451
SRA accession
FDA Center for Food Safety and Applied Nutrition
collected_by
2022-11-29
collection_date
PAS
collection_site_id
4L
collection_volume
peg precipitation + ultracentrifugation
concentration_method
Murine norovirus
extraction_control
qiagen rneasy kit
extraction_method
USA: Mississippi
geo_loc_name
wastewater
isolation_source
wastewater metagenome
http://purl.obolibrary.org/obo/NCBITaxon_527639
organism
wastewater metagenome
organism
GenomeTrakr
project_name
public health surveillance community-level
purpose_of_ww_sampling
detection of target organism by RT PCR or ddPCR
purpose_of_ww_sequencing
221129PI-125_rep1
sample_name
SARS-CoV-2: wastewater surveillance
sample_title
Biological replicate
specimen_processing
Not Provided
specimen_processing_details
rep1
specimen_processing_id
SARS-CoV-2: wastewater surveillance
title
crAssphage
ww_endog_control_1
RT-qPCR Detectionof Process Controls (Murine noroviurs and crAssphage) from Wastewater using AB 7500 (protocols.io)
ww_endog_control_1_protocol
Not Collected
ww_flow
Not Collected
ww_industrial_effluent_percent
7.33
ww_ph
36969
ww_population
EPA Echo DMR
ww_population_source
Not Provided
ww_pre_treatment
Not Collected
ww_primary_sludge_retention_time
Not Provided
ww_processing_protocol
0
ww_sample_duration
raw wastewater
ww_sample_matrix
Not Collected
ww_sample_salinity
wastewater treatment plant
ww_sample_site
grab
ww_sample_type
Not Provided
ww_surv_jurisdiction
CFSANSMP000124134
ww_surv_system_sample_id
SARS-CoV-2
ww_surv_target_1
170
ww_surv_target_1_conc
MPN genomic copies/L
ww_surv_target_1_conc_unit
N (N1)
ww_surv_target_1_gene
yes
ww_surv_target_1_known_present
RT-qPCR Detectionof SARS-CoV-2 from Wastewater Using the AB 7500 (protocols.io)
ww_surv_target_1_protocol
SARS CoV 2
ww_surv_target_2
350
ww_surv_target_2_conc
MPN genomic copies/L
ww_surv_target_2_conc_unit
N (N2)
ww_surv_target_2_gene
yes
ww_surv_target_2_known_present
Not Collected
ww_temperature
0
ww_total_suspended_solids