SAMN32755940
External Id
G10K
INSDC center name
2023-01-16T00:00:00Z
INSDC first public
2023-10-30T12:57:20.720Z
INSDC last update
SRS19335847
INSDC secondary accession
live
INSDC status
Model organism or animal
NCBI submission model
Model.organism.animal.1.0
NCBI submission package
SRS19335847
SRA accession
MT 002-2, MT 002-3, MT 002-6
Tube IDs
Universidad de los Andes
biomaterial_provider
Mauricio Torres
collected_by
2021-06-26
collection_date
Trichomycterus rosablanca is a new troglobitic catfish species from caves in southeastern Santander, Colombia. These caves are drained by the Carare River of the Magdalena River basin. The new species is characterized by the advanced condition in the typical troglomorphisms found in other congeneric cave-dwelling species, such as absence of eyes and pigmentation (written by Carlos DoNascimiento 2018, Biota Colombiana). This sample is from a male found in Andes caves in Santander, Colombia, collected by Mauricio Torres and coordinated by Daniel Cadena to generate a high-quality reference genome for the Vertebrate Genomes Project (VGP) and a Colombia Genomes Project. Sequencing and genome assembly were conducted at the Vertebrate Genomes Lab (VGL) at the Rockefeller University, led by Olivier Fedrigo and Erich D. Jarvis.
description
adult
dev_stage
Colombia: Andes Mountains, Santander
geo_loc_name
fTriRos1
isolate
6 N 73 W
lat_lon
Trichomycterus rosablanca
http://purl.obolibrary.org/obo/NCBITaxon_2290929
organism
male
sex
heart, liver, muscle
tissue
Animal sample from Trichomycterus rosablanca (Rosablanca cavefish) for VGP genome, fTriRos1
title
flash frozen in liquid nitrogen
treatment