SAMN34552708
External Id
University of Sydney
INSDC center name
2023-10-17T00:00:00Z
INSDC first public
2023-10-17T10:33:02.104Z
INSDC last update
SRS17582312
INSDC secondary accession
live
INSDC status
Metagenome or environmental
NCBI submission model
Metagenome.environmental.1.0
NCBI submission package
SRS17582312
SRA accession
2016-09-20
collection_date
Coral tissue was collected and identified by divers in Bonaparte Archipelago, Kimberely, Western Australia. Total RNA was extracted using the RNeasy Plus Mini Kit (Qiagen, Hilden, Germany) as previously described in (Geoghegan et al. 2021). These libraries were constructed using the Truseq Total RNA Library Preparation Protocol (Illumina). Host ribosomal RNA (rRNA) was depleted with the Ribo-Zero Plus Kit (Illumina) and paired-end sequencing (150 bp) was carried out on the NovaSeq 500 platform (Illlumina). Library construction and metatranscriptomic sequencing were performed by the Australian Genome Research Facility (AGRF).
description
Australia: Montelivet Island, Bonaparte Archipelago, inshore Kimberley, Western Australia
geo_loc_name
Heliopora coerulea
host
Subtidal
isolation_source
14.28778 S 125.2127 E
lat_lon
coral metagenome
http://purl.obolibrary.org/obo/NCBITaxon_496922
organism
Metagenome of Heliopora coerulea
title