SAMN37116970
External Id
Instituto de Biotecnologia
INSDC center name
2023-11-03T00:00:00Z
INSDC first public
2023-11-03T12:08:19.581Z
INSDC last update
SRS18695125
INSDC secondary accession
live
INSDC status
SARS-CoV-2: clinical or host-associated
NCBI submission model
SARS-CoV-2.cl.1.0
NCBI submission package
SRS18695125
SRA accession
not collected
antiviral_treatment_agent
Instituto Mexicano del Seguro Social
collected_by
2021-09-28
collection_date
not collected
collection_device
Nasopharyngeal and oropharyngeal swab
collection_method
not collected
date_of_prior_antiviral_treat
not collected
date_of_prior_sars_cov_2_infection
not collected
date_of_sars_cov_2_vaccination
Sample collected in public hospitals
description
not collected
exposure_event
not collected
geo_loc_exposure
Mexico: Quintana Roo
geo_loc_name
EPI_ISL_5850828
gisaid_accession
hCoV-19/Mexico/ROO_LANGEBIO_IMSS_2808/2021
gisaid_virus_name
Homo sapiens
host
38
host_age
mucus
host_anatomical_material
Nasopharynge and oropharynge
host_anatomical_part
mucus
host_body_product
COVID-19
host_disease
not collected
host_disease_outcome
Ambulatory
host_health_state
not collected
host_recent_travel_loc
not collected
host_recent_travel_return_date
female
host_sex
not applicable
host_specimen_voucher
IMSS_8959
host_subject_id
Swab
isolate
Nasopharyngeal and oropharyngeal swab
isolation_source
not collected
lat_lon
Severe acute respiratory syndrome coronavirus 2
http://purl.obolibrary.org/obo/NCBITaxon_2697049
organism
not applicable
passage_method
not applicable
passage_number
not collected
prior_sars_cov_2_antiviral_treat
not collected
prior_sars_cov_2_infection
not collected
prior_sars_cov_2_vaccination
Genomic surveillance
purpose_of_sampling
variant determination
purpose_of_sequencing
not collected
sars_cov_2_diag_gene_name_1
not collected
sars_cov_2_diag_gene_name_2
not collected
sars_cov_2_diag_pcr_ct_value_1
not collected
sars_cov_2_diag_pcr_ct_value_2
Consorcio Mexicano de Vigilancia Genomica (CoViGen-Mex). Julio Elias Alvarado-Yaah, Carlos F. Arias, Santiago Avila-Rios, Victor Hugo Borja-Aburto, Celia Boukadida, Juan Bautista Chale-Dzul , Jose Antonio Enciso-Moreno, Gloria Elena Espinoza-Ayala, Fernando Fontove-Herrera, Concepcion Grajales-Muniz, Ricardo Grande, Alfredo Herrera-Estrella, Carla Ivon Herrera-Najera, Pavel Isa, Brenda Irasema Maldonado-Meza, Bernardo Martinez-Miguel, Margarita Matias-Florentino, Maria Guadalupe de Jesus Mireles-Rivera, Gloria Maria Molina-Salinas, Hector Montoya-Fuentes, Jose Esteban Munoz-Medina, Jose de Jesus Nunez-Contreras, Alicia Ocana-Mondragon, Luis Alberto Ochoa-Carrera, Hector Esteban Paz-Juarez, Francisco Pulido, Helen Haydee Fernanda Ramirez-Plascencia, Angel Gustavo Salas-Lais, Jorge Ivan Salinal-Nevarez, Alejandro Sanchez-Flores, Clara Esperanza Santacruz-Tinoco, Maria Guadalupe Santiago-Mauricio, Nelly Selem-Mojica, Blanca Taboada, Gloria Vazquez
sequenced_by
L026_202101024016_S157
title
not collected
vaccine_received
not collected
virus_isolate_of_prior_infection