SAMN35344160
External Id
Agroscope
INSDC center name
2023-10-14T12:40:42.360Z
INSDC first public
2023-10-14T12:40:42.360Z
INSDC last update
live
INSDC status
Microbe, viral or environmental
NCBI submission model
Microbe.1.0
NCBI submission package
ERS16863187
SRA accession
Agroscope Changins, groupe Virology, Bacteriology and Phytoplasmology Route de Duillier 50, Case Postale 1012, 1260 Nyon 1, Switzerland
biomaterial_provider
Agroscope Waedenswil
collected_by
2018-07
collection_date
In search for biological control agents, forty-four bacterial strains isolated from greenhouse beet roots were screened for antagonistic activity against the plant parasitic root-knot nematode (RKN) Meloidogyne incognita, which causes significant yield losses in a number of important crops worldwide. Through a combination of in vitro and on planta screening assays, Pseudomonas spp. 105 and 108 were identified as the most promising bacterial isolates and were subsequently sequenced and de-novo assembled.
description
Switzerland:Waedenswil
geo_loc_name
Roots of Beta vulgaris, variety Pablo
host
Greenhous Agroscope Waedenswil
isolation_source
Pseudomonas sp. P108
http://purl.obolibrary.org/obo/NCBITaxon_1837993
organism
Bacterial strain
sample_type
P108
strain
Microbe sample from Pseudomonas sp.
title