SAMN37117198
External Id
Instituto de Biotecnologia
INSDC center name
2023-11-03T00:00:00Z
INSDC first public
2023-11-03T12:08:26.671Z
INSDC last update
SRS18695293
INSDC secondary accession
live
INSDC status
SARS-CoV-2: clinical or host-associated
NCBI submission model
SARS-CoV-2.cl.1.0
NCBI submission package
SRS18695293
SRA accession
not collected
antiviral_treatment_agent
Instituto Mexicano del Seguro Social
collected_by
2023-01-10
collection_date
not collected
collection_device
Pharyngeal / Nasopharyngeal swab
collection_method
not collected
date_of_prior_antiviral_treat
not collected
date_of_prior_sars_cov_2_infection
not collected
date_of_sars_cov_2_vaccination
Sample collected in public hospitals
description
not collected
exposure_event
not collected
geo_loc_exposure
Mexico: Guanajuato
geo_loc_name
EPI_ISL_16877390
gisaid_accession
hCoV-19/Mexico/GUA_IBT_IMSS_00840/2023
gisaid_virus_name
Homo sapiens
host
25
host_age
mucus
host_anatomical_material
Pharynge / Nasopharynge
host_anatomical_part
mucus
host_body_product
COVID-19
host_disease
not collected
host_disease_outcome
Ambulatory
host_health_state
not collected
host_recent_travel_loc
not collected
host_recent_travel_return_date
female
host_sex
not applicable
host_specimen_voucher
IMSS_27070
host_subject_id
Swab
isolate
Pharyngeal / Nasopharyngeal swab
isolation_source
not collected
lat_lon
Severe acute respiratory syndrome coronavirus 2
http://purl.obolibrary.org/obo/NCBITaxon_2697049
organism
not applicable
passage_method
not applicable
passage_number
not collected
prior_sars_cov_2_antiviral_treat
not collected
prior_sars_cov_2_infection
not collected
prior_sars_cov_2_vaccination
Genomic surveillance
purpose_of_sampling
variant determination
purpose_of_sequencing
not collected
sars_cov_2_diag_gene_name_1
not collected
sars_cov_2_diag_gene_name_2
not collected
sars_cov_2_diag_pcr_ct_value_1
not collected
sars_cov_2_diag_pcr_ct_value_2
Consorcio Mexicano de Vigilancia Genomica (CoViGen-Mex). Julio Elías Alvarado-Yaah, Carlos F. Arias, Eduardo Becerril-Vargas, David Alejandro Cabrera-Gaytán, Guillermo Corona Armenta, Cristóbal Cháidez-Quiróz, Hermilo Domínguez-Zarate, Julissa Enciso-Ibarra, Gloria Espinosa-Ayala, Daniel Fregoso-Rueda, Alejandra García-Gasca, Rodrigo García-López, Bruno Gómez-Gil, Jean Pierre González, Irvin González-López, Ricardo Grande, Alfredo Herrera-Estrella, Carla Ivón Herrera-Nájera, Beatriz Jiménez-Moraila, Daniel Lira-Morales, Brenda Irasema Maldonado-Meza, María Guadalupe Márquez-Rosales, Julio César Martínez-Álvarez, Bernardo Martínez-Miguel, Gabriela Bibiana Martínez-Morales, Célida Martínez-Rodríguez, Fidencio Mejía-Nepomuceno, María Guadalupe de Jesús Mireles-Rivera, Gloria María Molina-Salinas, Héctor Montoya-Fuentes, Mario Mújica-Sánchez, José Esteban Muñoz-Medina, José de Jesús Nuñez-Contreras, Ilse Patricia Salinas-Peralta, Bruno Tonatiuh Rivas-Santiago, Mauricio Rosales-Rivera, Jorge Salas-Hernández, Ángel Gustavo Salas-Lais, Alejandro Sánchez-Flores, Clara Esperanza Santacruz-Tinoco, Nelly Sélem-Mojica, Blanca Taboada, Gloria Vázquez, Joel Armando Vázquez-Pérez.
sequenced_by
L079_202301000840_CIBO_S538
title
not collected
vaccine_received
not collected
virus_isolate_of_prior_infection