SAMN36985101
External Id
Los Angeles County Public Health Lab microbial pathogen submission group
INSDC center name
2023-08-14T00:00:00Z
INSDC first public
2023-09-26T08:41:03.015Z
INSDC last update
SRS18617532
INSDC secondary accession
live
INSDC status
Microbe, viral or environmental
NCBI submission model
Microbe.1.0
NCBI submission package
SRS18617532
SRA accession
parC_S80I,parE_S458A,gyrA_D87N,gyrA_S83L,ftsI_N337NYRIN,blaNDM-5,ble,sul1,aadA2,dfrA12,aph(6)-Id,aph(3'')-Ib,sul2,blaCTX-M-15,mph(A),tet(A),catB3,blaOXA-1,aac(6')-Ib-cr5,blaTEM-1,aph(3')-Ia
amrfinderplus_amr_genes
AMIKACIN/KANAMYCIN/QUINOLONE/TOBRAMYCIN,AZTREONAM,BETA-LACTAM,BLEOMYCIN,CARBAPENEM,CEPHALOSPORIN,CHLORAMPHENICOL,EFFLUX,KANAMYCIN,MACROLIDE,QUINOLONE,STREPTOMYCIN,SULFONAMIDE,TETRACYCLINE,TRIMETHOPRIM
amrfinderplus_amr_subclasses
2023-04-17.1
amrfinderplus_db_version
2023-06-29
collection_date
USA: California, Los Angeles County
geo_loc_name
Homo sapiens
host
urine
isolation_source
ST167
mlst
Escherichia coli
http://purl.obolibrary.org/obo/NCBITaxon_562
organism
ecoli_achtman_4
pubmlst_scheme
whole organism
sample_type
LACPHL-BACT-2023-00020
strain
Microbe sample from Escherichia coli
title