SAMN37070185
External Id
Mesocricetus auratus
Host
Cornell University
INSDC center name
2023-08-22T00:00:00Z
INSDC first public
2023-08-22T10:45:02.369Z
INSDC last update
SRS18673930
INSDC secondary accession
live
INSDC status
Model organism or animal
NCBI submission model
Model.organism.animal.1.0
NCBI submission package
Homo sapiens
Original host
Hookworm infection
Original host disease
Human fecal samples
Original isolation source
2014
Original strain collection date
Prof. Ricardo Toshio Fujiwara (Federal University of Minas Gerais)
Original strain collector
33 rounds of serial passage through Syrian golden hamsters (Mesocricetus auratus) immunosuppressed with dexamethasone
Passage history
SRS18673930
SRA accession
2019/2021
collection_date
Genomic DNA sequence data for the wild-type reference strain Aroian of the major human hookworm Necator americanus are provided here: these data include long Oxford Nanopore Technologies (ONT) reads, short Illumina reads, and Dovetail/Cantata Omni-C reads (Illumina for Hi-C chromosomal scaffolding). These reads have been assembled into a chromosomally scaffolded genome for which protein-coding genes have been predicted.
description
Adults
dev_stage
USA: Laboratory of Raffi Aroian, Univ. Massachusetts Chan Med. School, Worcester, MA
geo_loc_name
Necator americanus
http://purl.obolibrary.org/obo/NCBITaxon_51031
organism
pooled male and female
sex
Aroian
strain
Whole animal
tissue
Genomic DNA from Necator americanus Aroian
title