SAMN37347079
External Id
Institut National de la Recherche Scientifique
INSDC center name
2023-09-11T00:00:00Z
INSDC first public
2023-09-11T13:42:54.580Z
INSDC last update
SRS18852484
INSDC secondary accession
live
INSDC status
Metagenome or environmental
NCBI submission model
Metagenome.environmental.1.0
NCBI submission package
SRS18852484
SRA accession
2021-09
collection_date
16S RNA gene raw sequences were made using the 341F and 805R primers targeting the V3 -V4 regions. Illumina MiSeq technology was used on a total of 63 Atlantic cods blood from the Southern region of the Gulf of St. Lawrence in 2021, a declining population since the 90's. The goal was to characterized the wild fish's circulating microbiome and correlate it with environmental and physiological data to create health biomarkers.
description
Canada: Gulf of St. Lawrence
geo_loc_name
Gadus morhua
host
blood
isolate
Gulf of St. Lawrence
isolation_source
48.00 N 63.11 W
lat_lon
fish metagenome
http://purl.obolibrary.org/obo/NCBITaxon_496924
organism
not applicable
rel_to_oxygen
Sterilized heparin coated syringe
samp_collect_device
FTA Card
samp_mat_process
200 uL
samp_size
Metagenome or environmental sample from Gadus morhua blood
title