SAMN37915777
External Id
University of Waterloo
INSDC center name
2023-10-25T00:00:00Z
INSDC first public
2023-10-25T16:13:21.130Z
INSDC last update
SRS19275533
INSDC secondary accession
live
INSDC status
Metagenome or environmental
NCBI submission model
Metagenome.environmental.1.0
NCBI submission package
SRS19275533
SRA accession
2023-07-10
collection_date
24-hour composite wastewater influent collected from a wastewater treatment plant in Canada, Cambridge. Microbes were isolated using Ceres Nanotrap Microbiome A isolation beads, RNA was extracted and PCR-amplifed with primers specific to the Tomato Brown Roguse Fruit Virus genome sequence. PCR amplicons were prepared for Illumina sequencing using the Illumina DNA Library prep kit.
description
Canada: Cambridge
geo_loc_name
not applicable
host
Wastewater Treatment Plant
isolation_source
43.34061516 N 80.31516912 W
lat_lon
wastewater metagenome
http://purl.obolibrary.org/obo/NCBITaxon_527639
organism
24-hour composite
samp_collect_device
Amplicon-seq
samp_mat_process
Targeted Amplicon Sequencing of Tomato Brown Rugose Fruit Virus Genomes in Wastewater Influent Site C
title