SAMN37915778
External Id
University of Waterloo
INSDC center name
2023-10-25T00:00:00Z
INSDC first public
2023-10-25T16:13:21.243Z
INSDC last update
SRS19275534
INSDC secondary accession
live
INSDC status
Metagenome or environmental
NCBI submission model
Metagenome.environmental.1.0
NCBI submission package
SRS19275534
SRA accession
2023-07-10
collection_date
Wastewater influent grab sample collected from a linear pipe collection site in Canada, York. Microbes were isolated using Ceres Nanotrap Microbiome A isolation beads, RNA was extracted and PCR-amplifed with primers specific to the Tomato Brown Roguse Fruit Virus genome sequence. PCR amplicons were prepared for Illumina sequencing using the Illumina DNA Library prep kit.
description
Canada: York
geo_loc_name
not applicable
host
Linear Pipe Collection Site
isolation_source
43.84560186 N 79.33503011 W
lat_lon
wastewater metagenome
http://purl.obolibrary.org/obo/NCBITaxon_527639
organism
Grab sample
samp_collect_device
Amplicon-seq
samp_mat_process
Targeted Amplicon Sequencing of Tomato Brown Rugose Fruit Virus Genomes in Wastewater Influent Site D
title