SAMN37886180
External Id
Sanford Health Imagenetics Sanford Medical Genetics Laboratory
INSDC center name
2023-10-19T00:00:00Z
INSDC first public
2023-10-19T17:09:32.277Z
INSDC last update
SRS19208368
INSDC secondary accession
live
INSDC status
SARS-CoV-2: clinical or host-associated
NCBI submission model
SARS-CoV-2.cl.1.0
NCBI submission package
SRS19208368
SRA accession
Sanford Health
collected_by
2022-11-24
collection_date
Virus Transport Medium [OBI:0002866]
collection_device
Swabbing [GENEPIO:0002117]
collection_method
USA: South Dakota
geo_loc_name
Homo sapiens
host
49.827777777777776
host_age
COVID-19 [MONDO:0100096]
host_disease
female
host_sex
SARS-CoV-2/human/USA/SMGL_COVSeq_1015/2023
isolate
clinical
isolation_source
Severe acute respiratory syndrome coronavirus 2
http://purl.obolibrary.org/obo/NCBITaxon_2697049
organism
Diagnostic Testing [GENEPIO:0100002]
purpose_of_sampling
Baseline surveillance (random sampling) [GENEPIO:0100005]
purpose_of_sequencing
Determining early introductions and spread
purpose_of_sequencing_details
N (orf9)
sars_cov_2_diag_gene_name_1
ORF1ab (rep)
sars_cov_2_diag_gene_name_2
27.672
sars_cov_2_diag_pcr_ct_value_1
27.106
sars_cov_2_diag_pcr_ct_value_2
Sanford Medical Genetics Laboratory
sequenced_by
SARS-CoV-2: clinical or host-associated sample from Severe acute respiratory syndrome coronavirus 2
title