SAMN25965735
External Id
CFSANSMP000113716
External Id
CFSAN
INSDC center name
2022-02-15T00:00:00Z
INSDC first public
2023-12-06T12:02:03.866Z
INSDC last update
SRS12015738
INSDC secondary accession
live
INSDC status
SARS-CoV-2: wastewater surveillance
NCBI submission model
SARS-CoV-2.wwsurv.1.0
NCBI submission package
SRS12015738
SRA accession
FDA Center for Food Safety and Applied Nutrition
collected by
2022-02-08
collection date
PAS
http://www.ebi.ac.uk/efo/EFO_0006465
collection site id
0.6979166666666666
collection time
4L
collection volume
peg precipitation + ultracentrifugation
concentration method
peg precipitation + ultracentrifugation
concentration_method
PAS grab 10:45am
description
Murine norovirus
extraction_control
qiagen rneasy kit
extraction_method
USA: Mississippi
geo loc name
wastewater
isolation source
wastewater metagenome
http://purl.obolibrary.org/obo/NCBITaxon_527639
organism
GenomeTrakr; LFFM ww project
project name
public health surveillance community-level
purpose of wastewater sampling
Tracking SARS-CoV-2 variants
purpose of wastewater sequencing
no quality control issues identified
quality_control_details
no quality control issues identified
quality_control_determination
no quality control issues identified
quality_control_issues
CFSAN Wastewater Analysis Pipeline (C-WAP)
quality_control_method
not collected
sample processing
not collected
sample processing details
not collected
sample processing id
FDA Center for Food Safety and Applied Nutrition
sequenced by
SARS-CoV-2: wastewater surveillance sample from wastewater metagenome
title
crAssphage
wastewater endogenous control 1
not collected
wastewater endogenous control 1 concentration
RT-qPCR DetectionÊof Process Controls (Murine noroviurs and crAssphage) from Wastewater using AB 7500 (protocols.io)
wastewater endogenous control 1 protocol
not collected
wastewater endogenous control 2
not collected
wastewater endogenous control 2 conc
not collected
wastewater endogenous control 2 protocol
not collected
wastewater endogenous control 2 units
not collected
wastewater flow
12.4
wastewater industrial effluent percent
6.82
wastewater ph
EPA Echo DMR
wastewater population source
Bar screen (2)
wastewater pre treatment
not collected
wastewater primary sludge retention time
not collected
wastewater processing protocol
not collected
wastewater sample salinity
wastewater treatment plant
wastewater sample site
not collected
wastewater surveillance system sample id
not collected
wastewater temperature
not collected
wastewater total suspended solids
SARS-CoV-2
http://purl.obolibrary.org/obo/NCBITaxon_2697049
ww surv target 1
36969
ww_population
0
ww_sample_duration
raw wastewater
ww_sample_matrix
grab
ww_sample_type
50
ww_surv_target_1_conc
Ct values
ww_surv_target_1_conc_unit
N (N1)
ww_surv_target_1_gene
yes
ww_surv_target_1_known_present
RT-qPCR DetectionÊof SARS-CoV-2 from Wastewater Using the AB 7500 (protocols.io)
ww_surv_target_1_protocol
SARS-CoV-2
ww_surv_target_2
120
ww_surv_target_2_conc
Ct values
ww_surv_target_2_conc_unit
N (N2)
ww_surv_target_2_gene
yes
ww_surv_target_2_known_present
RT-qPCR DetectionÊof SARS-CoV-2 from Wastewater Using the AB 7500 (protocols.io)
ww_surv_target_2_protocol