CFSANSMP000115462
External Id
SAMN27603742
External Id
wastewater
Genus
CFSAN
INSDC center name
2022-04-15T00:00:00Z
INSDC first public
2023-12-06T12:04:15.088Z
INSDC last update
SRS12624833
INSDC secondary accession
live
INSDC status
SARS-CoV-2: wastewater surveillance
NCBI submission model
SARS-CoV-2.wwsurv.1.0
NCBI submission package
PRJNA757447
ProjectAccession
CFSANSMP000115462
PublicAccession
SRS12624833
SRA accession
metagenome
Species
SARS-CoV-2: wastewater surveillance
attribute_package
FDA Center for Food Safety and Applied Nutrition
collected_by
2022-04-05
collection_date
PAS
collection_site_id
peg precipitation + ultracentrifugation
concentration_method
Zymo Environ Water RNA kit
extraction_method
USA: Mississippi
geo_loc_name
wastewater
isolation_source
wastewater metagenome
http://purl.obolibrary.org/obo/NCBITaxon_527639
organism
GenomeTrakr
project_name
public health surveillance community-level
purpose_of_ww_sampling
low % genome captured
quality_control_details
minor quality control issues identified
quality_control_determination
low % genome captured
quality_control_issues
CFSAN Wastewater Analysis Pipeline (C-WAP)
quality_control_method
Wed Jul 20 17:11:48 2022 -0400
quality_control_method_version
220405PI-57_rep1
sample_name
SARS-CoV-2: wastewater surveillance sample from wastewater metagenome
title
not collected
ww_flow
1
ww_population
0
ww_sample_duration
raw wastewater
ww_sample_matrix
grab
ww_sample_type
CFSANSMP000115462
ww_surv_system_sample_id
SARS-CoV-2
ww_surv_target_1
120
ww_surv_target_1_conc
yes
ww_surv_target_1_known_present
48
ww_surv_target_2_conc