SAMN27307866
External Id
OH ADDL submission group
INSDC center name
2022-04-05T00:00:00Z
INSDC first public
2023-12-06T12:10:52.769Z
INSDC last update
SRS13121010
INSDC secondary accession
live
INSDC status
SARS-CoV-2: wastewater surveillance
NCBI submission model
SARS-CoV-2.wwsurv.1.0
NCBI submission package
SRS13121010
SRA accession
Ohio State Department of Agriculture
collected by
2022-01-30
collection date
3PD0047
http://purl.obolibrary.org/obo/CHEBI_85993
collection_site_id
1L
collection_volume
innovaprep ultrafiltration
concentration_method
qiagen allprep powerviral dna/rna kit
extraction method
Bovine Coronavirus Modified Live Vaccine
extraction_control
USA: Ohio
geo loc name
wastewater
isolation source
wastewater metagenome
http://purl.obolibrary.org/obo/NCBITaxon_527639
organism
GenomeTrakr; LFFM ww project
project name
public health surveillance community-level
purpose_of_ww_sampling
detection of target by RT PCR or ddPCR
purpose_of_ww_sequencing
Ohio State Department of Agriculture
sequenced_by
biological replicate
specimen_processing
SARS-CoV-2: wastewater surveillance sample from wastewater metagenome
title
Pepper Mild Mottle Virus
ww_endog_control_1
8238000
ww_endog_control_1_conc
GT-Digital SARS-CoV-2 Wastewater Surveillance Assay For QIAcuity dPCR
ww_endog_control_1_protocol
copies/L wastewater
ww_endog_control_1_units
Not Reported
ww_flow
7.8
ww_ph
6500
ww_population
wastewater treatment plant records
ww_population_source
GT-Digital SARS-CoV-2 Wastewater Surveillance Assay For QIAcuity dPCR
ww_processing_protocol
24
ww_sample_duration
raw wastewater
ww_sample_matrix
wastewater treatment plant
ww_sample_site
composite
ww_sample_type
OH
ww_surv_jurisdiction
SARS-CoV-2
http://purl.obolibrary.org/obo/NCBITaxon_2697049
ww_surv_target_1
70840
ww_surv_target_1_conc
copies/L wastewater
ww_surv_target_1_conc_unit
N gene (N2)
ww_surv_target_1_gene
no
ww_surv_target_1_known_present
GT-Digital SARS-CoV-2 Wastewater Surveillance Assay For QIAcuity dPCR
ww_surv_target_1_protocol
SARS-CoV-2
http://purl.obolibrary.org/obo/NCBITaxon_2697049
ww_surv_target_2
77840
ww_surv_target_2_conc
copies/L wastewater
ww_surv_target_2_conc_unit
N gene (N1)
ww_surv_target_2_gene
no
ww_surv_target_2_known_present
11.7
ww_temperature
40
ww_total_suspended_solids