peg precipitation + ultracentrifugation
Concentration Method (group)
SAMN25978139
External Id
Kentucky State Cabinet for Health and Family Services
INSDC center name
2022-02-15T00:00:00Z
INSDC first public
2023-12-06T12:06:47.030Z
INSDC last update
live
INSDC status
SARS-CoV-2: wastewater surveillance
NCBI submission model
SARS-CoV-2.wwsurv.1.0
NCBI submission package
ERS17299677
SRA accession
180
Ww Population
collection site records
Ww Population Source
Kentucky State Cabinet for Health and Family Services
collected_by
2021-10-03
collection date
WFD
collection_site_id
6L
http://www.ebi.ac.uk/efo/EFO_0006450
collection_volume
peg precipitation + ultracentrifugation
concentration_method
qiagen qiaamp viral rna mini kit
extraction method
USA: Kentucky
geo loc name
wastewater
isolation source
wastewater metagenome
http://purl.obolibrary.org/obo/NCBITaxon_527639
organism
public health surveillance community-level
purpose_of_ww_sampling
Covid concetration
purpose_of_ww_sequencing
Kentucky State Cabinet for Health and Family Services
sequenced_by
M22-059
title
Crassphage
ww_endog_control_1
97330225, 92595602, 86813117, 81368701
ww_endog_control_1_conc
Bio Rad ddPCR custom
ww_endog_control_1_protocol
Copies/L
ww_endog_control_1_units
180
ww_population
24 hours
ww_sample_duration
raw wastewater
ww_sample_matrix
['', '']
ww_sample_salinity
sewer pipeline
ww_sample_site
composite
ww_sample_type
SARS-CoV-2
ww_surv_target_1
60380, 43426, 42050, 35409
ww_surv_target_1_conc
Copies/L
ww_surv_target_1_conc_unit
1.86, 1.34, 1.29, 1.09
ww_surv_target_1_extract
Copies/uL
ww_surv_target_1_extract_unit
N1
ww_surv_target_1_gene
yes
ww_surv_target_1_known_present
Bio Rad ddPCR custom
ww_surv_target_1_protocol
SARS-CoV-2
ww_surv_target_2
53666, 58638, 30364, 35409
ww_surv_target_2_conc
Copies/L
ww_surv_target_2_conc_unit
1.65, 1.80, 0.93, 1.09
ww_surv_target_2_extract
Copies/uL
ww_surv_target_2_extract_unit
N2
ww_surv_target_2_gene
yes
ww_surv_target_2_known_present
Bio Rad ddPCR custom
ww_surv_target_2_protocol
['', '']
ww_total_suspended_solids