SAMN30675826
External Id
DudleyLab|PennStateUniversity
INSDC center name
2022-09-05T00:00:00Z
INSDC first public
2023-12-06T12:14:01.470Z
INSDC last update
live
INSDC status
SARS-CoV-2: wastewater surveillance
NCBI submission model
SARS-CoV-2.wwsurv.1.0
NCBI submission package
ERS17800115
SRA accession
Pennsylvania State University|Dudley Lab
collected_by
2022-06-22
collection_date
PSU-WWTP-2
collection_site_id
1L
collection_volume
peg precipitation + ultracentrifugation
concentration_method
murine norovirus
extraction_control
qiagen rneasy kit
extraction_method
USA: Pennsylvania
geo_loc_name
wastewater
isolation_source
wastewater metagenome
http://purl.obolibrary.org/obo/NCBITaxon_527639
organism
GenomeTrakr; LFFM ww project
project_name
public health surveillance community-level
purpose_of_ww_sampling
Community Surveillance for SARS-CoV-2 Variants
purpose_of_ww_sequencing
Pennsylvania State University|Dudley Lab
sequenced_by
technical replicate
specimen_processing
SARS-CoV-2: wastewater surveillance sample from wastewater metagenome
title
not collected
ww_flow
24057
ww_population
US Census records
ww_population_source
24
ww_sample_duration
raw wastewater
ww_sample_matrix
wastewater treatment plant
ww_sample_site
composite
ww_sample_type
PA
ww_surv_jurisdiction
not collected
ww_surv_target_1
Below limit of detection
ww_surv_target_1_conc
cycles (Ct value)
ww_surv_target_1_conc_unit
N gene (N1)
ww_surv_target_1_gene
not collected
ww_surv_target_1_known_present
RT-qPCR Detection of SARS-CoV-2 from Wastewater Using the AB 7500 (protocols.io)
ww_surv_target_1_protocol
Cycles (Ct value)
ww_surv_target_2_conc_unit