SAMN35446059
External Id
University of Minnesota
INSDC center name
2023-05-31T00:00:00Z
INSDC first public
2023-12-21T16:33:02.510Z
INSDC last update
SRS19960754
INSDC secondary accession
live
INSDC status
MIGS/MIMS/MIMARKS.host-associated
NCBI submission model
MIMARKS.survey
NCBI submission model
MIMARKS.survey.host-associated.6.0
NCBI submission package
SRS19960754
SRA accession
not applicable
calving_date
2019-05-30
collection_date
3699.180558
copy_number_16S
not applicable
days_in_milk
Keywords: GSC:MIxS;MIMARKS:6.0
description
not applicable
env_broad_scale
not applicable
env_local_scale
not applicable
env_medium
2019-11-21T00:00:00
extraction_date
Farm B
farm_id
USA
geo_loc_name
not applicable
host
not applicable
host_body_habitat
not applicable
host_genotype
not applicable
host_life_stage
not applicable
host_sex
not applicable
host_subject_id
not applicable
host_taxid
not applicable
lat_lon
32.4
mean_quality
3
megabases
Sterile gauze square kept in whirl-pak bag within farm
neg_cont_type
metagenome
http://purl.obolibrary.org/obo/NCBITaxon_256318
organism
76.66
percent_gt_q30
0.02
percent_of_lane
17.26
percent_one_mismatch
82.74
percent_perfect
100
percent_pf
5307
pf_clusters
not applicable
pos_cont_type
Q43
qiacube_batch
not applicable
samp_collect_device
not applicable
samp_mat_process
-80C
samp_store_temp
Blank
sample_type
2
sequencing_batch
Technician E
technician_id
MIMARKS Survey related sample from metagenome
title