SAMN38761804
External Id
Wayne State University
INSDC center name
2023-12-11T00:00:00Z
INSDC first public
2023-12-11T14:06:37.121Z
INSDC last update
live
INSDC status
Pathogen.cl
NCBI submission model
Pathogen.cl.1.0
NCBI submission package
ERS17902096
SRA accession
GCA_034424965.2
assembly_ID
Andrew D. Berti
collected_by
2020-09-01
collection_date
ST5-MRSA-IVg CC5
genotype
Staphylococcus
genus
USA: Detroit, MI
geo_loc_name
Homo sapiens
host
54
host_age
Patient with history of peripheral vascular disease and uncontrolled diabetes presents with polymicrobial, non-healing left lower extremity wound extending to exposed bone. Clinical course was complicated by polymicrobial bacteremia including Proteus mirabilis and Staphylococcus aureus. Surgical management included below-the-knee amputation. Medical management included vancomycin plus cefepime transitioned to daptomycin, cefepime and metronidazole. Patient was stabilized and left against medical advice prior to rehabilitation placement. Duration of bacteremia: 8 days.
host_description
non-healing wound
host_disease
recovery
host_disease_outcome
male
host_sex
BSS43
host_subject_id
B0589
isolate-name-alias
blood
isolation_source
42.33 N 83.05 W
lat_lon
Staphylococcus aureus
http://purl.obolibrary.org/obo/NCBITaxon_1280
organism
BSN43
strain
Pathogen: clinical or host-associated sample from Staphylococcus aureus
title