SAMN39052626
External Id
University of Minnesota
INSDC center name
2023-12-21T00:00:00Z
INSDC first public
2023-12-21T15:59:07.819Z
INSDC last update
live
INSDC status
MIGS/MIMS/MIMARKS.host-associated
NCBI submission model
MIMARKS.survey
NCBI submission model
MIMARKS.survey.host-associated.6.0
NCBI submission package
ERS17938885
SRA accession
not applicable
calving_date
2019-12-10
collection_date
1151.252803
copy_number_16S
not applicable
days_in_milk
Keywords: GSC:MIxS;MIMARKS:6.0
description
not applicable
env_broad_scale
not applicable
env_local_scale
not applicable
env_medium
2019-12-16T00:00:00
extraction_date
Farm E
farm_id
USA
geo_loc_name
not applicable
host
not applicable
host_body_habitat
not applicable
host_genotype
not applicable
host_life_stage
not applicable
host_sex
not applicable
host_subject_id
not applicable
host_taxid
not applicable
lat_lon
33.56
mean_quality
44
megabases
Sterile gauze square kept in whirl-pak bag within farm
neg_cont_type
bovine metagenome
http://purl.obolibrary.org/obo/NCBITaxon_1218275
organism
81.37
percent_gt_q30
0.34
percent_of_lane
10.13
percent_one_mismatch
89.87
percent_perfect
100
percent_pf
72602
pf_clusters
not applicable
pos_cont_type
Q71
qiacube_batch
not applicable
samp_collect_device
not applicable
samp_mat_process
-80C
samp_store_temp
Blank
sample_type
3
sequencing_batch
Technician A
technician_id
MIMARKS Survey related sample from bovine metagenome
title