SAMN39053867
External Id
University of Minnesota
INSDC center name
2023-12-21T00:00:00Z
INSDC first public
2023-12-21T16:42:17.547Z
INSDC last update
live
INSDC status
MIGS/MIMS/MIMARKS.human-associated
NCBI submission model
MIMARKS.survey
NCBI submission model
MIMARKS.survey.human-associated.6.0
NCBI submission package
ERS17939805
SRA accession
not applicable
calving_date
2020-02-12
collection_date
808.3374473
copy_number_16S
NA
days_in_milk
Keywords: GSC:MIxS;MIMARKS:6.0
description
not applicable
env_broad_scale
not applicable
env_local_scale
not applicable
env_medium
2020-02-12T00:00:00
extraction_date
Other
farm_id
USA
geo_loc_name
not applicable
host
Teat apex
host_body_habitat
not applicable
host_genotype
NA
host_life_stage
female
host_sex
POS
host_subject_id
9913
host_taxid
not applicable
lat_lon
30.62
mean_quality
7
megabases
not applicable
neg_cont_type
bovine metagenome
http://purl.obolibrary.org/obo/NCBITaxon_1218275
organism
69.11
percent_gt_q30
0.06
percent_of_lane
13.13
percent_one_mismatch
86.87
percent_perfect
100
percent_pf
11314
pf_clusters
ZymoBIOMICS D6321
pos_cont_type
Q159
qiacube_batch
not applicable
samp_collect_device
not applicable
samp_mat_process
-80C
samp_store_temp
Positive
sample_type
6
sequencing_batch
Technician D
technician_id
MIMARKS Survey related sample from bovine metagenome
title