SAMN39053053
External Id
University of Minnesota
INSDC center name
2023-12-21T00:00:00Z
INSDC first public
2023-12-21T16:42:05.978Z
INSDC last update
live
INSDC status
MIGS/MIMS/MIMARKS.human-associated
NCBI submission model
MIMARKS.survey
NCBI submission model
MIMARKS.survey.human-associated.6.0
NCBI submission package
ERS17938992
SRA accession
2019-04-11T00:00:00
calving_date
2019-04-04
collection_date
1721948.94
copy_number_16S
-7
days_in_milk
Keywords: GSC:MIxS;MIMARKS:6.0
description
not applicable
env_broad_scale
not applicable
env_local_scale
not applicable
env_medium
2019-12-30T00:00:00
extraction_date
Farm B
farm_id
USA
geo_loc_name
Bos taurus
host
Teat apex
host_body_habitat
H
host_genotype
Prepartum
host_life_stage
female
host_sex
23606
host_subject_id
9913
host_taxid
not applicable
lat_lon
31.91
mean_quality
25
megabases
not applicable
neg_cont_type
bovine metagenome
http://purl.obolibrary.org/obo/NCBITaxon_1218275
organism
74.39
percent_gt_q30
0.23
percent_of_lane
13.37
percent_one_mismatch
86.63
percent_perfect
100
percent_pf
41475
pf_clusters
not applicable
pos_cont_type
Q87
qiacube_batch
Sterile gauze square
samp_collect_device
Sterile gauze square premoistened with 1X phosphate buffer saline
samp_mat_process
-80C
samp_store_temp
Sample
sample_type
4
sequencing_batch
Technician A
technician_id
MIMARKS Survey related sample from bovine metagenome
title