SAMN39080536
External Id
University of Minnesota
INSDC center name
2023-12-22T00:00:00Z
INSDC first public
2023-12-22T12:47:08.863Z
INSDC last update
live
INSDC status
MIGS/MIMS/MIMARKS.host-associated
NCBI submission model
MIMARKS.survey
NCBI submission model
MIMARKS.survey.host-associated.6.0
NCBI submission package
ERS17943745
SRA accession
2019-08-24T00:00:00
calving_date
2019-09-24
collection_date
72177.00252
copy_number_16S
31
days_in_milk
Keywords: GSC:MIxS;MIMARKS:6.0
description
not applicable
env_broad_scale
not applicable
env_local_scale
not applicable
env_medium
2021-09-23T00:00:00
extraction_date
Farm A
farm_id
USA
geo_loc_name
Bos taurus
host
Teat apex
host_body_habitat
H
host_genotype
Postpartum
host_life_stage
female
host_sex
84744
host_subject_id
9913
host_taxid
not applicable
lat_lon
30.9
mean_quality
28
megabases
not applicable
neg_cont_type
bovine metagenome
http://purl.obolibrary.org/obo/NCBITaxon_1218275
organism
69.87
percent_gt_q30
0.22
percent_of_lane
14.61
percent_one_mismatch
85.39
percent_perfect
100
percent_pf
46128
pf_clusters
not applicable
pos_cont_type
Q447
qiacube_batch
Sterile gauze square
samp_collect_device
Sterile gauze square premoistened with 10X phosphate buffer saline
samp_mat_process
-80C
samp_store_temp
Sample
sample_type
20
sequencing_batch
Technician E
technician_id
MIMARKS Survey related sample from bovine metagenome
title