SAMN39055816
External Id
University of Minnesota
INSDC center name
2023-12-21T00:00:00Z
INSDC first public
2023-12-21T18:32:15.719Z
INSDC last update
live
INSDC status
MIGS/MIMS/MIMARKS.host-associated
NCBI submission model
MIMARKS.survey
NCBI submission model
MIMARKS.survey.host-associated.6.0
NCBI submission package
ERS17941388
SRA accession
2019-06-05T00:00:00
calving_date
2019-06-17
collection_date
5617141.402
copy_number_16S
12
days_in_milk
Keywords: GSC:MIxS;MIMARKS:6.0
description
not applicable
env_broad_scale
not applicable
env_local_scale
not applicable
env_medium
2020-08-28T00:00:00
extraction_date
Farm B
farm_id
USA
geo_loc_name
Bos taurus
host
Teat apex
host_body_habitat
H
host_genotype
Postpartum
host_life_stage
female
host_sex
24166
host_subject_id
9913
host_taxid
not applicable
lat_lon
33.08
mean_quality
33
megabases
not applicable
neg_cont_type
bovine metagenome
http://purl.obolibrary.org/obo/NCBITaxon_1218275
organism
79.17
percent_gt_q30
0.27
percent_of_lane
9.68
percent_one_mismatch
90.32
percent_perfect
100
percent_pf
55132
pf_clusters
not applicable
pos_cont_type
Q259
qiacube_batch
Sterile gauze square
samp_collect_device
Sterile gauze square premoistened with 10X phosphate buffer saline
samp_mat_process
-80C
samp_store_temp
Sample
sample_type
12
sequencing_batch
Technician E
technician_id
MIMARKS Survey related sample from bovine metagenome
title