SAMN39054574
External Id
University of Minnesota
INSDC center name
2023-12-21T00:00:00Z
INSDC first public
2023-12-21T17:08:15.777Z
INSDC last update
live
INSDC status
MIGS/MIMS/MIMARKS.host-associated
NCBI submission model
MIMARKS.survey
NCBI submission model
MIMARKS.survey.host-associated.6.0
NCBI submission package
ERS17940464
SRA accession
NA
calving_date
2020-01-09
collection_date
461.4181071
copy_number_16S
NA
days_in_milk
Keywords: GSC:MIxS;MIMARKS:6.0
description
not applicable
env_broad_scale
not applicable
env_local_scale
not applicable
env_medium
2020-06-24T00:00:00
extraction_date
Farm C
farm_id
USA
geo_loc_name
not applicable
host
not applicable
host_body_habitat
not applicable
host_genotype
not applicable
host_life_stage
not applicable
host_sex
AIR
host_subject_id
not applicable
host_taxid
not applicable
lat_lon
30.2
mean_quality
4
megabases
Sterile gauze square removed from whirl-pak bag within farm
neg_cont_type
bovine metagenome
http://purl.obolibrary.org/obo/NCBITaxon_1218275
organism
67.85
percent_gt_q30
0.04
percent_of_lane
20.68
percent_one_mismatch
79.32
percent_perfect
100
percent_pf
6643
pf_clusters
not applicable
pos_cont_type
Q204
qiacube_batch
not applicable
samp_collect_device
not applicable
samp_mat_process
-80C
samp_store_temp
Air
sample_type
9
sequencing_batch
Technician F
technician_id
MIMARKS Survey related sample from bovine metagenome
title