SAMN39056460
External Id
University of Minnesota
INSDC center name
2023-12-21T00:00:00Z
INSDC first public
2023-12-21T18:55:12.273Z
INSDC last update
live
INSDC status
MIGS/MIMS/MIMARKS.host-associated
NCBI submission model
MIMARKS.survey
NCBI submission model
MIMARKS.survey.host-associated.6.0
NCBI submission package
ERS17941967
SRA accession
not applicable
calving_date
2019-09-27
collection_date
431.7186887
copy_number_16S
not applicable
days_in_milk
Keywords: GSC:MIxS;MIMARKS:6.0
description
not applicable
env_broad_scale
not applicable
env_local_scale
not applicable
env_medium
2021-02-17T00:00:00
extraction_date
Farm C
farm_id
USA
geo_loc_name
not applicable
host
not applicable
host_body_habitat
not applicable
host_genotype
not applicable
host_life_stage
not applicable
host_sex
SBLANK
host_subject_id
not applicable
host_taxid
not applicable
lat_lon
30.73
mean_quality
40
megabases
Sterile gauze square kept in whirl-pak bag within farm
neg_cont_type
bovine metagenome
http://purl.obolibrary.org/obo/NCBITaxon_1218275
organism
69.25
percent_gt_q30
0.29
percent_of_lane
13.36
percent_one_mismatch
86.64
percent_perfect
100
percent_pf
66950
pf_clusters
not applicable
pos_cont_type
Q319
qiacube_batch
Sterile gauze square
samp_collect_device
Sterile gauze square premoistened with 10X phosphate buffer saline
samp_mat_process
-80C
samp_store_temp
Blank
sample_type
14
sequencing_batch
Technician B
technician_id
MIMARKS Survey related sample from bovine metagenome
title