SAMN39054487
External Id
University of Minnesota
INSDC center name
2023-12-21T00:00:00Z
INSDC first public
2023-12-21T17:08:14.621Z
INSDC last update
live
INSDC status
MIGS/MIMS/MIMARKS.host-associated
NCBI submission model
MIMARKS.survey
NCBI submission model
MIMARKS.survey.host-associated.6.0
NCBI submission package
ERS17940380
SRA accession
NA
calving_date
2020-03-17
collection_date
56.62319533
copy_number_16S
NA
days_in_milk
Keywords: GSC:MIxS;MIMARKS:6.0
description
not applicable
env_broad_scale
not applicable
env_local_scale
not applicable
env_medium
2020-03-17T00:00:00
extraction_date
Other
farm_id
USA
geo_loc_name
not applicable
host
not applicable
host_body_habitat
not applicable
host_genotype
not applicable
host_life_stage
not applicable
host_sex
EXT
host_subject_id
not applicable
host_taxid
not applicable
lat_lon
32.85
mean_quality
20
megabases
CD1 lysis buffer (Qiagen, Powersoil Pro Kit)
neg_cont_type
bovine metagenome
http://purl.obolibrary.org/obo/NCBITaxon_1218275
organism
78.48
percent_gt_q30
0.17
percent_of_lane
11.32
percent_one_mismatch
88.68
percent_perfect
100
percent_pf
32625
pf_clusters
not applicable
pos_cont_type
Q190
qiacube_batch
not applicable
samp_collect_device
not applicable
samp_mat_process
not applicable
samp_store_temp
Extraction
sample_type
8
sequencing_batch
Technician A
technician_id
MIMARKS Survey related sample from bovine metagenome
title