SAMN39079692
External Id
University of Minnesota
INSDC center name
2023-12-22T00:00:00Z
INSDC first public
2023-12-22T12:28:05.220Z
INSDC last update
live
INSDC status
MIGS/MIMS/MIMARKS.host-associated
NCBI submission model
MIMARKS.survey
NCBI submission model
MIMARKS.survey.host-associated.6.0
NCBI submission package
ERS17943052
SRA accession
not applicable
calving_date
not applicable
collection_date
1.12383557
copy_number_16S
not applicable
days_in_milk
Keywords: GSC:MIxS;MIMARKS:6.0
description
not applicable
env_broad_scale
not applicable
env_local_scale
not applicable
env_medium
2021-06-03T00:00:00
extraction_date
Other
farm_id
USA
geo_loc_name
Bos taurus
host
not applicable
host_body_habitat
not applicable
host_genotype
not applicable
host_life_stage
not applicable
host_sex
EXT
host_subject_id
not applicable
host_taxid
not applicable
lat_lon
29.7
mean_quality
1
megabases
CD1 lysis buffer (Qiagen, Powersoil Pro Kit)
neg_cont_type
bovine metagenome
http://purl.obolibrary.org/obo/NCBITaxon_1218275
organism
65.71
percent_gt_q30
0.01
percent_of_lane
26.99
percent_one_mismatch
73.01
percent_perfect
100
percent_pf
1808
pf_clusters
not applicable
pos_cont_type
Q356
qiacube_batch
not applicable
samp_collect_device
not applicable
samp_mat_process
not applicable
samp_store_temp
Extraction
sample_type
16
sequencing_batch
Technician B
technician_id
MIMARKS Survey related sample from bovine metagenome
title