SAMN39080144
External Id
University of Minnesota
INSDC center name
2023-12-22T00:00:00Z
INSDC first public
2023-12-22T12:28:11.520Z
INSDC last update
live
INSDC status
MIGS/MIMS/MIMARKS.host-associated
NCBI submission model
MIMARKS.survey
NCBI submission model
MIMARKS.survey.host-associated.6.0
NCBI submission package
ERS17943508
SRA accession
not applicable
calving_date
2019-06-13
collection_date
9.641712542
copy_number_16S
not applicable
days_in_milk
Keywords: GSC:MIxS;MIMARKS:6.0
description
not applicable
env_broad_scale
not applicable
env_local_scale
not applicable
env_medium
2021-06-18T00:00:00
extraction_date
Farm B
farm_id
USA
geo_loc_name
Bos taurus
host
not applicable
host_body_habitat
not applicable
host_genotype
not applicable
host_life_stage
not applicable
host_sex
SBLANK
host_subject_id
not applicable
host_taxid
not applicable
lat_lon
31.93
mean_quality
2
megabases
Sterile gauze square kept in whirl-pak bag within farm
neg_cont_type
bovine metagenome
http://purl.obolibrary.org/obo/NCBITaxon_1218275
organism
74.41
percent_gt_q30
0.02
percent_of_lane
13.11
percent_one_mismatch
86.89
percent_perfect
100
percent_pf
3280
pf_clusters
not applicable
pos_cont_type
Q384
qiacube_batch
Sterile gauze square
samp_collect_device
Sterile gauze square premoistened with 10X phosphate buffer saline
samp_mat_process
-80C
samp_store_temp
Blank
sample_type
18
sequencing_batch
Technician B
technician_id
MIMARKS Survey related sample from bovine metagenome
title