characteristics.text: 2024-02-04
characteristics.characteristic: ENA first public
characteristics.text: ERC000028
characteristics.characteristic: ENA-CHECKLIST
characteristics.text: SAMEA104098211
characteristics.characteristic: External Id
characteristics.text: JIC
characteristics.characteristic: INSDC center name
characteristics.text: 2017-05-24T20:59:54Z
characteristics.characteristic: INSDC last update
characteristics.text: public
characteristics.characteristic: INSDC status
characteristics.text: ERS1762104
characteristics.characteristic: SRA accession
characteristics.text: AJ_Pathseq
characteristics.characteristic: Submitter Id
characteristics.text: 2015
characteristics.characteristic: collection date
characteristics.text: We designed an RNA bait library to target sequences from many microbial species including Albugo candida, Albugo laibachii, Phytophthora infestans, Phytophthora capsici, Hyaloperonospora arabidopsidis, many fungi and bacteria as well as the nuclear internal transcribed spacer from several Brassicaceae species (use of 120 bp baits with no tiling, ordered from MYcroarray - custom MYbaits). In total, 115 samples were sequenced in three Illumina HiSeq 2500 lanes (using the rapid mode, 150 bp paired-end - PathSeq1 [enq_496] with 22 multiplexed samples, PathSeq2 [enq_889] with 46 samples and PathSeq 3 [enq_1238] with 47, library fragment size ~600 bp).
characteristics.characteristic: description
characteristics.text: Europa Island
characteristics.characteristic: geographic location (country and/or sea)
characteristics.text: diseased
characteristics.characteristic: host health state
characteristics.text: Brassicaceae
characteristics.characteristic: host scientific name
characteristics.text: Albugo candida, Albugo laibachii, Phytophthora infestans, Phytophthora capsici, Hyaloperonospora arabidopsidis
characteristics.characteristic: isolate
characteristics.text: plant leaf
characteristics.characteristic: isolation_source
characteristics.text: plant metagenome
characteristics.characteristic: organism
characteristics.text: plant metagenome
characteristics.characteristic: scientific_name
characteristics.text: Targeted sequencing of microbial sequences from environmental Brassicaceae leaf samples
characteristics.characteristic: title