characteristics.text: ERC000011
characteristics.characteristic: ENA-CHECKLIST
characteristics.text: 2020-03-09T04:03:25Z
characteristics.characteristic: ENA-FIRST-PUBLIC
characteristics.text: 2019-10-17T09:39:43Z
characteristics.characteristic: ENA-LAST-UPDATE
characteristics.text: SAMEA6087991
characteristics.characteristic: External Id
characteristics.text: UNIVERSITY OF MANCHESTER
characteristics.characteristic: INSDC center name
characteristics.text: 2020-03-09T04:03:25Z
characteristics.characteristic: INSDC first public
characteristics.text: 2019-10-17T09:39:43Z
characteristics.characteristic: INSDC last update
characteristics.text: public
characteristics.characteristic: INSDC status
characteristics.text: ERS3888397
characteristics.characteristic: SRA accession
characteristics.text: E-MTAB-8447:T_008 rep2
characteristics.characteristic: Submitter Id
characteristics.text: not available
characteristics.ontologyTerms: http://www.ebi.ac.uk/efo/EFO_0001071
characteristics.characteristic: age
characteristics.text: ArrayExpress
characteristics.ontologyTerms: http://www.ebi.ac.uk/efo/EFO_0009737
characteristics.characteristic: broker name
characteristics.text: human
characteristics.ontologyTerms: http://purl.obolibrary.org/obo/NCBITaxon_9606
characteristics.characteristic: common name
characteristics.text: Protocols: Biopsies were collected from consenting patients and snap frozen. Biopsies were minced with a scalpel and lysed in ATAC lysis buffer and Tn5 reactions were performed as described in \An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues\ Corces et al (2017) https://www.nature.com/articles/nmeth.4396 Libraries were constructed by amplifying transposed DNA with Illumina Nextera adapters as described in \An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues\ Corces et al (2017) https://www.nature.com/articles/nmeth.4396
characteristics.characteristic: description
characteristics.text: esophageal adenocarcinoma
characteristics.ontologyTerms: http://www.ebi.ac.uk/efo/EFO_0000478
characteristics.characteristic: disease
characteristics.text: 2
characteristics.characteristic: individual
characteristics.text: Homo sapiens
characteristics.characteristic: organism
characteristics.text: Homo sapiens
characteristics.ontologyTerms: http://purl.obolibrary.org/obo/NCBITaxon_9606
characteristics.characteristic: organism
characteristics.text: esophagus
characteristics.ontologyTerms: http://purl.obolibrary.org/obo/UBERON_0001043
characteristics.characteristic: organism part
characteristics.text: Homo sapiens
characteristics.characteristic: scientific_name
characteristics.text: female
characteristics.ontologyTerms: http://purl.obolibrary.org/obo/PATO_0000383
characteristics.characteristic: sex
characteristics.text: T_008 rep2
characteristics.characteristic: title