characteristics.text: ERC000011
characteristics.characteristic: ENA-CHECKLIST
characteristics.text: 2022-06-14T00:18:13Z
characteristics.characteristic: ENA-FIRST-PUBLIC
characteristics.text: 2022-06-14T00:18:13Z
characteristics.characteristic: ENA-LAST-UPDATE
characteristics.text: SAMEA10332731
characteristics.characteristic: External Id
characteristics.text: ROTHAMSTED RESEARCH
characteristics.characteristic: INSDC center name
characteristics.text: 2022-06-14T00:18:13Z
characteristics.characteristic: INSDC first public
characteristics.text: 2022-06-14T00:18:13Z
characteristics.characteristic: INSDC last update
characteristics.text: public
characteristics.characteristic: INSDC status
characteristics.text: ERS7987482
characteristics.characteristic: SRA accession
characteristics.text: Aphis_gossypii_genome
characteristics.characteristic: Submitter Id
characteristics.text: 2001
characteristics.characteristic: collection date
characteristics.text: cotton aphid
characteristics.characteristic: common name
characteristics.text: Annotated genome assembly of Aphis gossypii from the Pest Genomics Initiative. Multi-individual but clonal so only 2 haplotypes observed when snp/indel calling so potentially equivalent to single individual data. Resulting Falcon assembly were separated to two species using Aphis gossypii Illumina mapping. Haplotig removal and manual curation. Hi-C used to scaffold to chromosome level. Maker annotation pipeline used with both transcriptome transfer and de novo gene prediction as inputs to Evigene to pick best gene models. Curation of P450, ABC, UGT, IRAC gene models where RNA-seq evidence was present. Multi-individual taken for CLR PacBio (contaminated with myzus persicae) and multi-individual for Hi-C and 10X illumina sequencing. Bayer culture since 2001, collected from cucumber greehouse in Hohenheim Germany.
characteristics.characteristic: description
characteristics.text: Germany
characteristics.characteristic: geographic location (country and/or sea)
characteristics.text: Aphis gossypii
characteristics.characteristic: organism
characteristics.text: Aphis gossypii
characteristics.characteristic: scientific_name
characteristics.text: Annotated genome of Aphis gossypii from the Pest Genomics Initiative.
characteristics.characteristic: title