characteristics.text: ERC000011
characteristics.characteristic: ENA-CHECKLIST
characteristics.text: 2022-06-14T00:18:16Z
characteristics.characteristic: ENA-FIRST-PUBLIC
characteristics.text: 2022-06-14T00:18:16Z
characteristics.characteristic: ENA-LAST-UPDATE
characteristics.text: SAMEA10589439
characteristics.characteristic: External Id
characteristics.text: ROTHAMSTED RESEARCH
characteristics.characteristic: INSDC center name
characteristics.text: 2022-06-14T00:18:16Z
characteristics.characteristic: INSDC first public
characteristics.text: 2022-06-14T00:18:16Z
characteristics.characteristic: INSDC last update
characteristics.text: public
characteristics.characteristic: INSDC status
characteristics.text: ERS8241359
characteristics.characteristic: SRA accession
characteristics.text: Wolbachia_endosymbiont_of_Phyllotreta_cruciferae
characteristics.characteristic: Submitter Id
characteristics.text: 2020
characteristics.characteristic: collection date
characteristics.text: Genome assembly Wolbachia endosymbiont of Phyllotreta cruciferae. HiFiasm used to assemble HiFi reads and haplotigs purged. Manual curation and Hi-C to bring to chromosome level. HiFiasm does produce complete chromosome haplotigs for many of the chromosomes for this species, as it's a small genome. Suggest future update to would be to rerun haplotig assembly software like hifiasm or others and reannotate haplotype version. Single primary sequence assembly, not haplotype assembled. Single individual, unknown sex used for HiFi PacBio and Hi-C Illumina reads. Mixed sample with Phyllotreta striolata but one individual taken that is correct species. Taken from Canada in September 2020.
characteristics.characteristic: description
characteristics.text: Canada
characteristics.characteristic: geographic location (country and/or sea)
characteristics.text: Wolbachia endosymbiont of Phyllotreta cruciferae
characteristics.characteristic: organism
characteristics.text: Wolbachia endosymbiont of Phyllotreta cruciferae
characteristics.characteristic: scientific_name
characteristics.text: Genome assembly Wolbachia endosymbiont of Phyllotreta cruciferae from the Pest Genomics Initiative.
characteristics.characteristic: title