ERC000047
ENA-CHECKLIST
2022-08-09T16:29:47Z
ENA-FIRST-PUBLIC
2022-08-09T16:29:47Z
ENA-LAST-UPDATE
SAMEA110586598
External Id
EMG
INSDC center name
2022-08-09T16:29:47Z
INSDC first public
2022-08-09T16:29:47Z
INSDC last update
public
INSDC status
ERS12684380
SRA accession
SRR11784289_bin.6_metaWRAP_v1.3_MAG
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes v3.15.3
assembly software
MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning parameters
metaWRAP v1.3
binning software
Sheep digestive system
broad-scale environmental context
EBI-EMG
broker name
not provided
collection date
97.71
%
completeness score
CheckM
completeness software
0.48
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR11784289 of study SRP261434.
description
Rumen content
environmental medium
China
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
sheep gut metagenome
isolation_source
Rumen
local environmental context
sheep gut metagenome
metagenomic source
uncultured Lachnospiraceae bacterium
organism
Rumen metagenome based on Illumina Hiseq
project name
SAMN14884654
sample derived from
uncultured Lachnospiraceae bacterium
scientific_name
HiSeq X Ten
sequencing method
The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__;s__
taxonomic classification
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRR11784289_bin.6_metaWRAP_v1.3_MAG
title