ERC000047
ENA-CHECKLIST
2022-08-15T16:14:18Z
ENA-FIRST-PUBLIC
2022-08-15T16:14:18Z
ENA-LAST-UPDATE
SAMEA110651497
External Id
EMG
INSDC center name
2022-08-15T16:14:18Z
INSDC first public
2022-08-15T16:14:18Z
INSDC last update
public
INSDC status
ERS12749079
SRA accession
SRR9694907_bin.1_metawrap_v1.3.0_MAG
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes v3.15.3
assembly software
MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning parameters
metawrap v1.3.0
binning software
plant
broad-scale environmental context
EBI-EMG
broker name
2018-07-09
collection date
99.89
%
completeness score
CheckM
completeness software
0.1
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR9694907 of study SRP214949.
description
rhizosphere
environmental medium
USA
geographic location (country and/or sea)
34.0136
DD
geographic location (latitude)
-118.4673
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
rhizosphere metagenome
isolation_source
soybeen
local environmental context
rhizosphere metagenome
metagenomic source
Bradyrhizobium elkanii
organism
Edamame root nodule microbial communities collected in Santa Monica, California, United States
project name
SAMN11532651
sample derived from
Bradyrhizobium elkanii
scientific_name
Illumina NovaSeq 6000
sequencing method
The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Bradyrhizobiaceae;g__Bradyrhizobium;s__Bradyrhizobium elkanii
taxonomic classification
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRR9694907_bin.1_metawrap_v1.3.0_MAG
title