ERC000047
ENA-CHECKLIST
2022-08-09T16:29:48Z
ENA-FIRST-PUBLIC
2022-08-09T16:29:48Z
ENA-LAST-UPDATE
SAMEA110587022
External Id
EMG
INSDC center name
2022-08-09T16:29:48Z
INSDC first public
2022-08-09T16:29:48Z
INSDC last update
public
INSDC status
ERS12684804
SRA accession
ERR1864492_bin.1_metaWRAP_v1.3_MAG
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes v3.15.3
assembly software
MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning parameters
metaWRAP v1.3
binning software
Rainbow trout digestive system
broad-scale environmental context
EBI-EMG
broker name
2013-04-30
collection date
85.26
%
completeness score
CheckM
completeness software
0.38
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR1864492 of study ERP021849.
description
Gut content
environmental medium
USA
geographic location (country and/or sea)
45.68
DD
geographic location (latitude)
111.05
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
fish gut metagenome
isolation_source
Gut
local environmental context
fish gut metagenome
metagenomic source
uncultured Mycoplasmataceae bacterium
organism
Rainbow trout is an important aquaculture species. Feeding alternative diet to replace the conventional fishmeal diet has been the focus in aquaculture nutrition. This study investigates the effect of two alternative diets on the GIT of rainbow trout raised in a cultured environment.
project name
SAMEA102931918
sample derived from
uncultured Mycoplasmataceae bacterium
scientific_name
Illumina HiSeq 2500
sequencing method
The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Tenericutes;c__Mollicutes;o__Mycoplasmatales;f__Mycoplasmataceae;g__;s__
taxonomic classification
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: ERR1864492_bin.1_metaWRAP_v1.3_MAG
title