ERC000047
ENA-CHECKLIST
2022-08-16T20:15:17Z
ENA-FIRST-PUBLIC
2022-08-16T20:15:17Z
ENA-LAST-UPDATE
SAMEA110666292
External Id
EMG
INSDC center name
2022-08-16T20:15:17Z
INSDC first public
2022-08-16T20:15:17Z
INSDC last update
public
INSDC status
ERS12763872
SRA accession
SRR12377473_bin.7_metawrap_v1.3_MAG
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes v3.15.3
assembly software
MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning parameters
metawrap v1.3
binning software
Mouse digestive system
broad-scale environmental context
EBI-EMG
broker name
not provided
collection date
88.84
%
completeness score
CheckM
completeness software
0.55
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR12377473 of study SRP275700.
description
cecum
environmental medium
not provided
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
mouse gut metagenome
isolation_source
Digestive tube
local environmental context
mouse gut metagenome
metagenomic source
Lysinibacillus boronitolerans
organism
Extracellular vesicles (EVs) in bovine milk alter bacterial communities in the murine cecum, thereby implicating dietary EVs in cross-kingdom communication. Here we use metagenomics analysis to demonstrate that milk EVs contribute to the speciation of gut bacteria through the selection of genetic variations.
project name
SAMN15717195
sample derived from
Lysinibacillus boronitolerans
scientific_name
NextSeq 500
sequencing method
The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Lysinibacillus;s__Lysinibacillus boronitolerans
taxonomic classification
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRR12377473_bin.7_metawrap_v1.3_MAG
title