characteristics: ERC000047
characteristics: ENA-CHECKLIST
characteristics: 2022-10-11T16:18:42Z
characteristics: ENA-FIRST-PUBLIC
characteristics: 2022-10-11T16:18:42Z
characteristics: ENA-LAST-UPDATE
characteristics: SAMEA111454671
characteristics: External Id
characteristics: EMG
characteristics: INSDC center name
characteristics: 2022-10-11T16:18:42Z
characteristics: INSDC first public
characteristics: 2022-10-11T16:18:42Z
characteristics: INSDC last update
characteristics: public
characteristics: INSDC status
characteristics: ERS13549204
characteristics: SRA accession
characteristics: SRR13573580_bin.24_metawrap_v1.3_MAG
characteristics: Submitter Id
characteristics: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
characteristics: assembly quality
characteristics: metaSPAdes v3.15.3
characteristics: assembly software
characteristics: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
characteristics: binning parameters
characteristics: metawrap v1.3
characteristics: binning software
characteristics: mouse digestive system
characteristics: broad-scale environmental context
characteristics: EBI-EMG
characteristics: broker name
characteristics: 2019-05-30
characteristics: collection date
characteristics: 59.82
characteristics: %
characteristics: completeness score
characteristics: CheckM
characteristics: completeness software
characteristics: 2.96
characteristics: %
characteristics: contamination score
characteristics: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR13573580 of study SRP303709.
characteristics: description
characteristics: feces
characteristics: environmental medium
characteristics: China
characteristics: geographic location (country and/or sea)
characteristics: not provided
characteristics: DD
characteristics: geographic location (latitude)
characteristics: not provided
characteristics: DD
characteristics: geographic location (longitude)
characteristics: metagenome-assembled genome
characteristics: investigation type
characteristics: mouse gut metagenome
characteristics: isolation_source
characteristics: digestive tube
characteristics: local environmental context
characteristics: mouse gut metagenome
characteristics: metagenomic source
characteristics: uncultured Lachnospiraceae bacterium
characteristics: organism
characteristics: Human amylin is produced by mammary gland bioreactor to provide high activity and low cost protein for the treatment of diabetes. This study investigated the effect of amylin in oral milk on intestinal microflora in mice.
characteristics: project name
characteristics: SAMN17526363
characteristics: sample derived from
characteristics: uncultured Lachnospiraceae bacterium
characteristics: scientific_name
characteristics: HiSeq X Ten
characteristics: sequencing method
characteristics: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__;s__
characteristics: taxonomic classification
characteristics: multi-marker approach
characteristics: taxonomic identity marker
characteristics: Metagenome-assembled genome: SRR13573580_bin.24_metawrap_v1.3_MAG
characteristics: title