characteristics: ERC000047
characteristics: ENA-CHECKLIST
characteristics: 2022-10-13T16:34:14Z
characteristics: ENA-FIRST-PUBLIC
characteristics: 2022-10-13T16:34:14Z
characteristics: ENA-LAST-UPDATE
characteristics: SAMEA111465538
characteristics: External Id
characteristics: EMG
characteristics: INSDC center name
characteristics: 2022-10-13T16:34:14Z
characteristics: INSDC first public
characteristics: 2022-10-13T16:34:14Z
characteristics: INSDC last update
characteristics: public
characteristics: INSDC status
characteristics: ERS13559568
characteristics: SRA accession
characteristics: SRR12358620_bin.21_metawrap_v1.3_MAG
characteristics: Submitter Id
characteristics: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
characteristics: assembly quality
characteristics: metaSPAdes v3.15.3
characteristics: assembly software
characteristics: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
characteristics: binning parameters
characteristics: metawrap v1.3
characteristics: binning software
characteristics: mouse digestive system
characteristics: broad-scale environmental context
characteristics: EBI-EMG
characteristics: broker name
characteristics: 2012-04-01
characteristics: collection date
characteristics: 58.62
characteristics: %
characteristics: completeness score
characteristics: CheckM
characteristics: completeness software
characteristics: 3.45
characteristics: %
characteristics: contamination score
characteristics: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR12358620 of study SRP274524.
characteristics: description
characteristics: feces
characteristics: environmental medium
characteristics: Japan
characteristics: geographic location (country and/or sea)
characteristics: 35.6762
characteristics: DD
characteristics: geographic location (latitude)
characteristics: 139.6503
characteristics: DD
characteristics: geographic location (longitude)
characteristics: metagenome-assembled genome
characteristics: investigation type
characteristics: mouse gut metagenome
characteristics: isolation_source
characteristics: digestive tube
characteristics: local environmental context
characteristics: mouse gut metagenome
characteristics: metagenomic source
characteristics: uncultured Dorea sp.
characteristics: organism
characteristics: Effects of Fructooligosaccharides (FOS) on gut microbiota
characteristics: project name
characteristics: SAMN15684197
characteristics: sample derived from
characteristics: uncultured Dorea sp.
characteristics: scientific_name
characteristics: Illumina HiSeq 2000
characteristics: sequencing method
characteristics: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__Dorea;s__
characteristics: taxonomic classification
characteristics: multi-marker approach
characteristics: taxonomic identity marker
characteristics: Metagenome-assembled genome: SRR12358620_bin.21_metawrap_v1.3_MAG
characteristics: title