characteristics: ERC000047
characteristics: ENA-CHECKLIST
characteristics: 2022-10-13T12:28:59Z
characteristics: ENA-FIRST-PUBLIC
characteristics: 2022-10-13T12:28:59Z
characteristics: ENA-LAST-UPDATE
characteristics: SAMEA111464548
characteristics: External Id
characteristics: EMG
characteristics: INSDC center name
characteristics: 2022-10-13T12:28:59Z
characteristics: INSDC first public
characteristics: 2022-10-13T12:28:59Z
characteristics: INSDC last update
characteristics: public
characteristics: INSDC status
characteristics: ERS13558578
characteristics: SRA accession
characteristics: SRR6311991_bin.4_metaWRAP_v1.3_MAG
characteristics: Submitter Id
characteristics: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
characteristics: assembly quality
characteristics: metaSPAdes v3.15.3
characteristics: assembly software
characteristics: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
characteristics: binning parameters
characteristics: metaWRAP v1.3
characteristics: binning software
characteristics: Human digestive system
characteristics: broad-scale environmental context
characteristics: EBI-EMG
characteristics: broker name
characteristics: not provided
characteristics: collection date
characteristics: 98.31
characteristics: %
characteristics: completeness score
characteristics: CheckM
characteristics: completeness software
characteristics: 0.0
characteristics: %
characteristics: contamination score
characteristics: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR6311991 of study SRP125370.
characteristics: description
characteristics: Saliva
characteristics: environmental medium
characteristics: not provided
characteristics: geographic location (country and/or sea)
characteristics: not provided
characteristics: DD
characteristics: geographic location (latitude)
characteristics: not provided
characteristics: DD
characteristics: geographic location (longitude)
characteristics: metagenome-assembled genome
characteristics: investigation type
characteristics: human saliva metagenome
characteristics: isolation_source
characteristics: Oral cavity
characteristics: local environmental context
characteristics: human saliva metagenome
characteristics: metagenomic source
characteristics: Prevotella pallens
characteristics: organism
characteristics: 12 members from 34th indian scientific expedition to Antartica (34th ISEA) were enrolled for study for 3 months. In this study we analysed the oral microbiota of expedition member by Next Generation Sequencing techniques (NGS). We investigated the influence of seq-voyage and stay at Antartica, on the oral health of indian expedition member. Saliva samples were collected from 12 expedition members at 3 different time points viz. Before start of the journey, after the completetion of voyage and at the end at the stay at Antartica. samples were analysed for Whole Genome and 16s RNA Sequencing.
characteristics: project name
characteristics: SAMN08048866
characteristics: sample derived from
characteristics: Prevotella pallens
characteristics: scientific_name
characteristics: Illumina HiSeq 2500
characteristics: sequencing method
characteristics: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Prevotellaceae;g__Prevotella;s__Prevotella pallens
characteristics: taxonomic classification
characteristics: multi-marker approach
characteristics: taxonomic identity marker
characteristics: Metagenome-assembled genome: SRR6311991_bin.4_metaWRAP_v1.3_MAG
characteristics: title