characteristics: ERC000047
characteristics: ENA-CHECKLIST
characteristics: 2022-10-03T12:43:11Z
characteristics: ENA-FIRST-PUBLIC
characteristics: 2022-10-03T12:43:11Z
characteristics: ENA-LAST-UPDATE
characteristics: SAMEA111423484
characteristics: External Id
characteristics: EMG
characteristics: INSDC center name
characteristics: 2022-10-03T12:43:11Z
characteristics: INSDC first public
characteristics: 2022-10-03T12:43:11Z
characteristics: INSDC last update
characteristics: public
characteristics: INSDC status
characteristics: ERS13517159
characteristics: SRA accession
characteristics: ERR8099107_bin.22_metawrap_v1.3_MAG
characteristics: Submitter Id
characteristics: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
characteristics: assembly quality
characteristics: metaSPAdes v3.15.3
characteristics: assembly software
characteristics: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
characteristics: binning parameters
characteristics: metawrap v1.3
characteristics: binning software
characteristics: mouse digestive system
characteristics: broad-scale environmental context
characteristics: EBI-EMG
characteristics: broker name
characteristics: 2018-03-01
characteristics: collection date
characteristics: 91.14
characteristics: %
characteristics: completeness score
characteristics: CheckM
characteristics: completeness software
characteristics: 0.69
characteristics: %
characteristics: contamination score
characteristics: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR8099107 of study ERP134817.
characteristics: description
characteristics: feces
characteristics: environmental medium
characteristics: China
characteristics: geographic location (country and/or sea)
characteristics: 22.3
characteristics: DD
characteristics: geographic location (latitude)
characteristics: 114.18
characteristics: DD
characteristics: geographic location (longitude)
characteristics: metagenome-assembled genome
characteristics: investigation type
characteristics: mouse gut metagenome
characteristics: isolation_source
characteristics: digestive tube
characteristics: local environmental context
characteristics: mouse gut metagenome
characteristics: metagenomic source
characteristics: uncultured Porphyromonadaceae bacterium
characteristics: organism
characteristics: We provide metagenomic sequencing data of 16 male C57BL/6 mouse gut microbiomes. To explore the potential maternal and cage mate effects at the early stage after weaning, we chose littermates of two different mother mice and housed them in different cages. Four of the mice (My*, V*, E*, S*) were littermates of one mother mouse, while the rest four (J, Ms, N, U) were littermates of another mother mouse. My* and V* were co-housed in cage 1. U and N were co-housed in cage 3. E*, S* were co-housed together with J, and Ms in cage 2. Samples were collected at the 1st, 2nd, 9th, and 10th day after weaning (weaned at 21 days after birth). Samples of the first two time points and the last two time points were pooled, respectively, and subjected independently to shotgun metagenomic sequencing by the BIGSEQ-500 platform .
characteristics: project name
characteristics: SAMEA12364203
characteristics: sample derived from
characteristics: uncultured Porphyromonadaceae bacterium
characteristics: scientific_name
characteristics: BGISEQ-500
characteristics: sequencing method
characteristics: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__;s__
characteristics: taxonomic classification
characteristics: multi-marker approach
characteristics: taxonomic identity marker
characteristics: Metagenome-assembled genome: ERR8099107_bin.22_metawrap_v1.3_MAG
characteristics: title