characteristics: ERC000047
characteristics: ENA-CHECKLIST
characteristics: 2022-10-03T12:43:11Z
characteristics: ENA-FIRST-PUBLIC
characteristics: 2022-10-03T12:43:11Z
characteristics: ENA-LAST-UPDATE
characteristics: SAMEA111426061
characteristics: External Id
characteristics: EMG
characteristics: INSDC center name
characteristics: 2022-10-03T12:43:11Z
characteristics: INSDC first public
characteristics: 2022-10-03T12:43:11Z
characteristics: INSDC last update
characteristics: public
characteristics: INSDC status
characteristics: ERS13519736
characteristics: SRA accession
characteristics: SRR6706335_bin.1_metaWRAP_v1.3_MAG
characteristics: Submitter Id
characteristics: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
characteristics: assembly quality
characteristics: metaSPAdes v3.15.3
characteristics: assembly software
characteristics: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
characteristics: binning parameters
characteristics: metaWRAP v1.3
characteristics: binning software
characteristics: Fish digestive system
characteristics: broad-scale environmental context
characteristics: EBI-EMG
characteristics: broker name
characteristics: 2016-12-08
characteristics: collection date
characteristics: 94.49
characteristics: %
characteristics: completeness score
characteristics: CheckM
characteristics: completeness software
characteristics: 0.38
characteristics: %
characteristics: contamination score
characteristics: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR6706335 of study SRP132676.
characteristics: description
characteristics: Gut content
characteristics: environmental medium
characteristics: Norway
characteristics: geographic location (country and/or sea)
characteristics: 63.29
characteristics: DD
characteristics: geographic location (latitude)
characteristics: 9.08
characteristics: DD
characteristics: geographic location (longitude)
characteristics: metagenome-assembled genome
characteristics: investigation type
characteristics: fish gut metagenome
characteristics: isolation_source
characteristics: Gut
characteristics: local environmental context
characteristics: fish gut metagenome
characteristics: metagenomic source
characteristics: uncultured Mycoplasmataceae bacterium
characteristics: organism
characteristics: Factors affecting the establishment of an adult-like gut microbiota in marine environments remain largely unknown. In terrestrial animals, however, it is well established that the juvenile environment has a major impact on the gut microbiota later in life. Atlantic Salmon is an anadromous fish important in aquaculture with a juvenile freshwater stage, and an adult seawater stage. For wild salmon, there are major dietary changes with respect to availability of long-chain polyunsaturated fatty acids (LC-PUFA), with LC-PUFA being limited in freshwater. The aim of our work was therefore to determine the effect of a juvenile diet high LC-PUFA, as compared to diet low in LC-PUFA on the transition to an adult like gut microbiota for Atlantic Salmon.
characteristics: project name
characteristics: SAMN08518068
characteristics: sample derived from
characteristics: uncultured Mycoplasmataceae bacterium
characteristics: scientific_name
characteristics: Illumina MiSeq
characteristics: sequencing method
characteristics: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Tenericutes;c__Mollicutes;o__Mycoplasmatales;f__Mycoplasmataceae;g__;s__
characteristics: taxonomic classification
characteristics: multi-marker approach
characteristics: taxonomic identity marker
characteristics: Metagenome-assembled genome: SRR6706335_bin.1_metaWRAP_v1.3_MAG
characteristics: title