characteristics: ERC000047
characteristics: ENA-CHECKLIST
characteristics: 2022-10-03T20:33:05Z
characteristics: ENA-FIRST-PUBLIC
characteristics: 2022-10-03T20:33:05Z
characteristics: ENA-LAST-UPDATE
characteristics: SAMEA111428897
characteristics: External Id
characteristics: EMG
characteristics: INSDC center name
characteristics: 2022-10-03T20:33:05Z
characteristics: INSDC first public
characteristics: 2022-10-03T20:33:05Z
characteristics: INSDC last update
characteristics: public
characteristics: INSDC status
characteristics: ERS13522572
characteristics: SRA accession
characteristics: ERR4705259_bin.2_metaWRAP_v1.3_MAG
characteristics: Submitter Id
characteristics: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
characteristics: assembly quality
characteristics: metaSPAdes v3.15.3
characteristics: assembly software
characteristics: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
characteristics: binning parameters
characteristics: metaWRAP v1.3
characteristics: binning software
characteristics: Human reproductive system
characteristics: broad-scale environmental context
characteristics: EBI-EMG
characteristics: broker name
characteristics: 2017-01-01
characteristics: collection date
characteristics: 94.86
characteristics: %
characteristics: completeness score
characteristics: CheckM
characteristics: completeness software
characteristics: 0.68
characteristics: %
characteristics: contamination score
characteristics: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR4705259 of study ERP120692.
characteristics: description
characteristics: Vagina
characteristics: environmental medium
characteristics: Denmark
characteristics: geographic location (country and/or sea)
characteristics: 55.7
characteristics: DD
characteristics: geographic location (latitude)
characteristics: -12.6
characteristics: DD
characteristics: geographic location (longitude)
characteristics: metagenome-assembled genome
characteristics: investigation type
characteristics: vaginal metagenome
characteristics: isolation_source
characteristics: Vagina
characteristics: local environmental context
characteristics: vaginal metagenome
characteristics: metagenomic source
characteristics: Gardnerella vaginalis
characteristics: organism
characteristics: 8 pools of vaginal swabs, each taken from a single individual over the course of 8 consecutive days, were either PCR-amplified (V1-V3 or V3-V4 regions) or metagenomic sequenced.
characteristics: project name
characteristics: SAMEA6627877
characteristics: sample derived from
characteristics: Gardnerella vaginalis
characteristics: scientific_name
characteristics: DNBSEQ-G400
characteristics: sequencing method
characteristics: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Actinobacteria;c__Actinobacteria;o__Bifidobacteriales;f__Bifidobacteriaceae;g__Gardnerella;s__Gardnerella vaginalis
characteristics: taxonomic classification
characteristics: multi-marker approach
characteristics: taxonomic identity marker
characteristics: Metagenome-assembled genome: ERR4705259_bin.2_metaWRAP_v1.3_MAG
characteristics: title