characteristics: ERC000047
characteristics: ENA-CHECKLIST
characteristics: 2022-10-13T16:34:12Z
characteristics: ENA-FIRST-PUBLIC
characteristics: 2022-10-13T16:34:12Z
characteristics: ENA-LAST-UPDATE
characteristics: SAMEA111464881
characteristics: External Id
characteristics: EMG
characteristics: INSDC center name
characteristics: 2022-10-13T16:34:12Z
characteristics: INSDC first public
characteristics: 2022-10-13T16:34:12Z
characteristics: INSDC last update
characteristics: public
characteristics: INSDC status
characteristics: ERS13558911
characteristics: SRA accession
characteristics: ERR9465712_bin.21_metawrap_v1.3_MAG
characteristics: Submitter Id
characteristics: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
characteristics: assembly quality
characteristics: metaSPAdes v3.15.3
characteristics: assembly software
characteristics: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
characteristics: binning parameters
characteristics: metawrap v1.3
characteristics: binning software
characteristics: mouse digestive system
characteristics: broad-scale environmental context
characteristics: EBI-EMG
characteristics: broker name
characteristics: not provided
characteristics: collection date
characteristics: 99.48
characteristics: %
characteristics: completeness score
characteristics: CheckM
characteristics: completeness software
characteristics: 0.52
characteristics: %
characteristics: contamination score
characteristics: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR9465712 of study ERP136672.
characteristics: description
characteristics: feces
characteristics: environmental medium
characteristics: not provided
characteristics: geographic location (country and/or sea)
characteristics: not provided
characteristics: DD
characteristics: geographic location (latitude)
characteristics: not provided
characteristics: DD
characteristics: geographic location (longitude)
characteristics: metagenome-assembled genome
characteristics: investigation type
characteristics: mouse gut metagenome
characteristics: isolation_source
characteristics: digestive tube
characteristics: local environmental context
characteristics: mouse gut metagenome
characteristics: metagenomic source
characteristics: uncultured Lactobacillus sp.
characteristics: organism
characteristics: Comparison of the effect of Doxycycline and 9-tert-Butyl Doxycycline (9-TB) on the gut microbiome of mice with and without Influenza infection using whole metagenome sequencing of longitudinal fecal samples.
characteristics: project name
characteristics: SAMEA13832870
characteristics: sample derived from
characteristics: uncultured Lactobacillus sp.
characteristics: scientific_name
characteristics: Illumina NovaSeq 6000
characteristics: sequencing method
characteristics: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus murinus
characteristics: taxonomic classification
characteristics: multi-marker approach
characteristics: taxonomic identity marker
characteristics: Metagenome-assembled genome: ERR9465712_bin.21_metawrap_v1.3_MAG
characteristics: title