characteristics: ERC000047
characteristics: ENA-CHECKLIST
characteristics: 2022-10-03T12:43:11Z
characteristics: ENA-FIRST-PUBLIC
characteristics: 2022-10-03T12:43:11Z
characteristics: ENA-LAST-UPDATE
characteristics: SAMEA111426150
characteristics: External Id
characteristics: EMG
characteristics: INSDC center name
characteristics: 2022-10-03T12:43:11Z
characteristics: INSDC first public
characteristics: 2022-10-03T12:43:11Z
characteristics: INSDC last update
characteristics: public
characteristics: INSDC status
characteristics: ERS13519825
characteristics: SRA accession
characteristics: ERR3140002_bin.1_metaWRAP_v1.3_MAG
characteristics: Submitter Id
characteristics: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
characteristics: assembly quality
characteristics: metaSPAdes v3.14.1
characteristics: assembly software
characteristics: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
characteristics: binning parameters
characteristics: metaWRAP v1.3
characteristics: binning software
characteristics: Fish digestive system
characteristics: broad-scale environmental context
characteristics: EBI-EMG
characteristics: broker name
characteristics: not provided
characteristics: collection date
characteristics: 96.55
characteristics: %
characteristics: completeness score
characteristics: CheckM
characteristics: completeness software
characteristics: 0.91
characteristics: %
characteristics: contamination score
characteristics: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR3140002 of study ERP113609.
characteristics: description
characteristics: Gut content
characteristics: environmental medium
characteristics: not provided
characteristics: geographic location (country and/or sea)
characteristics: not provided
characteristics: DD
characteristics: geographic location (latitude)
characteristics: not provided
characteristics: DD
characteristics: geographic location (longitude)
characteristics: metagenome-assembled genome
characteristics: investigation type
characteristics: fish gut metagenome
characteristics: isolation_source
characteristics: Gut
characteristics: local environmental context
characteristics: fish gut metagenome
characteristics: metagenomic source
characteristics: uncultured Deferribacteraceae bacterium
characteristics: organism
characteristics: A study of the intestinal microbiome from two ecotypes of Atlantic cod and three additional Gadidae species, to investigate the effects of host phylogeny versus ecological factors in shaping the intestinal microbiome.
characteristics: project name
characteristics: SAMEA5316463
characteristics: sample derived from
characteristics: uncultured Deferribacteraceae bacterium
characteristics: scientific_name
characteristics: Illumina HiSeq 2500
characteristics: sequencing method
characteristics: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Deferribacteres;c__Deferribacteres;o__Deferribacterales;f__Deferribacteraceae;g__;s__
characteristics: taxonomic classification
characteristics: multi-marker approach
characteristics: taxonomic identity marker
characteristics: Metagenome-assembled genome: ERR3140002_bin.1_metaWRAP_v1.3_MAG
characteristics: title