characteristics: ERC000047
characteristics: ENA-CHECKLIST
characteristics: 2022-09-26T12:20:08Z
characteristics: ENA-FIRST-PUBLIC
characteristics: 2022-09-26T12:20:08Z
characteristics: ENA-LAST-UPDATE
characteristics: SAMEA111396765
characteristics: External Id
characteristics: EMG
characteristics: INSDC center name
characteristics: 2022-09-26T12:20:08Z
characteristics: INSDC first public
characteristics: 2022-09-26T12:20:08Z
characteristics: INSDC last update
characteristics: public
characteristics: INSDC status
characteristics: ERS13490688
characteristics: SRA accession
characteristics: SRR19721627_bin.8_metawrap_v1.3_MAG
characteristics: Submitter Id
characteristics: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
characteristics: assembly quality
characteristics: metaSPAdes v3.15.3
characteristics: assembly software
characteristics: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
characteristics: binning parameters
characteristics: metawrap v1.3
characteristics: binning software
characteristics: mouse digestive system
characteristics: broad-scale environmental context
characteristics: EBI-EMG
characteristics: broker name
characteristics: 2020-06-01
characteristics: collection date
characteristics: common name
characteristics: 98.66
characteristics: %
characteristics: completeness score
characteristics: CheckM
characteristics: completeness software
characteristics: 0.67
characteristics: %
characteristics: contamination score
characteristics: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR19721627 of study SRP382171.
characteristics: description
characteristics: feces
characteristics: environmental medium
characteristics: USA
characteristics: geographic location (country and/or sea)
characteristics: 34.0007
characteristics: DD
characteristics: geographic location (latitude)
characteristics: -81.0348
characteristics: DD
characteristics: geographic location (longitude)
characteristics: metagenome-assembled genome
characteristics: investigation type
characteristics: mouse gut metagenome
characteristics: isolation_source
characteristics: digestive tube
characteristics: local environmental context
characteristics: mouse gut metagenome
characteristics: metagenomic source
characteristics: uncultured Eubacterium sp.
characteristics: organism
characteristics: The study aimed to investigate the gut microbiome, antibiotic resistance, and mobile genetic element alteration associated with intestinal inflammation in early life exposure to cyanotoxin.
characteristics: project name
characteristics: SAMN28703795
characteristics: sample derived from
characteristics: uncultured Eubacterium sp.
characteristics: scientific_name
characteristics: NextSeq 550
characteristics: sequencing method
characteristics: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Eubacteriaceae;g__Eubacterium;s__
characteristics: taxonomic classification
characteristics: multi-marker approach
characteristics: taxonomic identity marker
characteristics: Metagenome-assembled genome: SRR19721627_bin.8_metawrap_v1.3_MAG
characteristics: title