characteristics: ERC000047
characteristics: ENA-CHECKLIST
characteristics: 2022-10-03T20:33:05Z
characteristics: ENA-FIRST-PUBLIC
characteristics: 2022-10-03T20:33:05Z
characteristics: ENA-LAST-UPDATE
characteristics: SAMEA111428910
characteristics: External Id
characteristics: EMG
characteristics: INSDC center name
characteristics: 2022-10-03T20:33:05Z
characteristics: INSDC first public
characteristics: 2022-10-03T20:33:05Z
characteristics: INSDC last update
characteristics: public
characteristics: INSDC status
characteristics: ERS13522585
characteristics: SRA accession
characteristics: SRR11293606_bin.4_metaWRAP_v1.3_MAG
characteristics: Submitter Id
characteristics: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
characteristics: assembly quality
characteristics: metaSPAdes v3.15.3
characteristics: assembly software
characteristics: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
characteristics: binning parameters
characteristics: metaWRAP v1.3
characteristics: binning software
characteristics: Human reproductive system
characteristics: broad-scale environmental context
characteristics: EBI-EMG
characteristics: broker name
characteristics: 2009-04-01
characteristics: collection date
characteristics: 89.66
characteristics: %
characteristics: completeness score
characteristics: CheckM
characteristics: completeness software
characteristics: 0.62
characteristics: %
characteristics: contamination score
characteristics: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR11293606 of study SRP252509.
characteristics: description
characteristics: Vagina
characteristics: environmental medium
characteristics: USA
characteristics: geographic location (country and/or sea)
characteristics: 47.6055
characteristics: DD
characteristics: geographic location (latitude)
characteristics: -122.32662
characteristics: DD
characteristics: geographic location (longitude)
characteristics: metagenome-assembled genome
characteristics: investigation type
characteristics: vaginal metagenome
characteristics: isolation_source
characteristics: Vagina
characteristics: local environmental context
characteristics: vaginal metagenome
characteristics: metagenomic source
characteristics: uncultured Prevotella sp.
characteristics: organism
characteristics: The goal of this project is to better understand the bacterial species comprising the human vaginal microbiome. Shotgun metagenomics was used to obtain whole genome sequence information for uncultivated vaginal bacteria and study their predicted functions. This work will help us understand why some women experience a dysbiotic vaginal microbiome (bacterial vaginosis) and associated complications in pregnancy, such as preterm birth.
characteristics: project name
characteristics: SAMN14363795
characteristics: sample derived from
characteristics: uncultured Prevotella sp.
characteristics: scientific_name
characteristics: Illumina HiSeq 2500
characteristics: sequencing method
characteristics: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Prevotellaceae;g__Prevotella;s__
characteristics: taxonomic classification
characteristics: multi-marker approach
characteristics: taxonomic identity marker
characteristics: Metagenome-assembled genome: SRR11293606_bin.4_metaWRAP_v1.3_MAG
characteristics: title