characteristics.text: ERC000050
characteristics.characteristic: ENA-CHECKLIST
characteristics.text: 2023-03-22T12:23:37Z
characteristics.characteristic: ENA-FIRST-PUBLIC
characteristics.text: 2023-03-22T12:23:37Z
characteristics.characteristic: ENA-LAST-UPDATE
characteristics.text: SAMEA112351832
characteristics.characteristic: External Id
characteristics.text: UNIVERSITY OF COPENHAGEN
characteristics.characteristic: INSDC center name
characteristics.text: 2023-03-22T12:23:37Z
characteristics.characteristic: INSDC first public
characteristics.text: 2023-03-22T12:23:37Z
characteristics.characteristic: INSDC last update
characteristics.text: public
characteristics.characteristic: INSDC status
characteristics.text: ERS14462729
characteristics.characteristic: SRA accession
characteristics.text: ERR4968569_bin.22_MetaWRAP_v1.1_bin
characteristics.characteristic: Submitter Id
characteristics.text: not provided
characteristics.characteristic: assembly software
characteristics.text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
characteristics.characteristic: binning parameters
characteristics.text: MetaWRAP v1.1
characteristics.characteristic: binning software
characteristics.text: Chicken digestive system
characteristics.characteristic: broad-scale environmental context
characteristics.text: EMG broker account, EMBL-EBI
characteristics.characteristic: broker name
characteristics.text: 2019-10-15
characteristics.characteristic: collection date
characteristics.text: 85.54
characteristics.unit: %
characteristics.characteristic: completeness score
characteristics.text: CheckM
characteristics.characteristic: completeness software
characteristics.text: 0.7
characteristics.unit: %
characteristics.characteristic: contamination score
characteristics.text: This sample represents a binned metagenome assembled from the metagenomic run ERR4968569 of study ERP125074.
characteristics.characteristic: description
characteristics.text: Caecum
characteristics.characteristic: environmental medium
characteristics.text: Spain
characteristics.characteristic: geographic location (country and/or sea)
characteristics.text: 41.170048
characteristics.unit: DD
characteristics.characteristic: geographic location (latitude)
characteristics.text: 1.168491
characteristics.unit: DD
characteristics.characteristic: geographic location (longitude)
characteristics.text: metagenome-assembled genome
characteristics.characteristic: investigation type
characteristics.text: chicken gut metagenome
characteristics.characteristic: isolation_source
characteristics.text: Digestive tube
characteristics.characteristic: local environmental context
characteristics.text: chicken gut metagenome
characteristics.characteristic: metagenomic source
characteristics.text: Parabacteroides merdae
characteristics.characteristic: organism
characteristics.text: Metagenomic raw reads, assemblies, and bins derived from HoloFood chicken caecum samples. Samples selected for this batch were deeply sequenced, and were randomised among trials (feed), age, and breed to overcome batch effect. The samples in this project contributed to the chicken caecum MAG catalogue (project: PRJEB55374 [ERP140263]).
characteristics.characteristic: project name
characteristics.text: SAMEA7697624
characteristics.characteristic: sample derived from
characteristics.text: Parabacteroides merdae
characteristics.characteristic: scientific_name
characteristics.text: DNBSEQ-G400
characteristics.characteristic: sequencing method
characteristics.text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides;s__Parabacteroides merdae
characteristics.characteristic: taxonomic classification
characteristics.text: multi-marker approach
characteristics.characteristic: taxonomic identity marker
characteristics.text: Binned metagenome: ERR4968569_bin.22_MetaWRAP_v1.1_bin
characteristics.characteristic: title