characteristics.text: ERC000047
characteristics.characteristic: ENA-CHECKLIST
characteristics.text: 2023-03-22T12:24:18Z
characteristics.characteristic: ENA-FIRST-PUBLIC
characteristics.text: 2023-03-22T12:24:18Z
characteristics.characteristic: ENA-LAST-UPDATE
characteristics.text: SAMEA112360724
characteristics.characteristic: External Id
characteristics.text: UNIVERSITY OF COPENHAGEN
characteristics.characteristic: INSDC center name
characteristics.text: 2023-03-22T12:24:18Z
characteristics.characteristic: INSDC first public
characteristics.text: 2023-03-22T12:24:18Z
characteristics.characteristic: INSDC last update
characteristics.text: public
characteristics.characteristic: INSDC status
characteristics.text: ERS14471079
characteristics.characteristic: SRA accession
characteristics.text: ERR4336989_bin.116_CONCOCT_v1.1.0_MAG
characteristics.characteristic: Submitter Id
characteristics.text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
characteristics.characteristic: assembly quality
characteristics.text: unknown v0.0
characteristics.characteristic: assembly software
characteristics.text: Default
characteristics.characteristic: binning parameters
characteristics.text: CONCOCT v1.1.0
characteristics.characteristic: binning software
characteristics.text: Chicken digestive system
characteristics.characteristic: broad-scale environmental context
characteristics.text: EMG broker account, EMBL-EBI
characteristics.characteristic: broker name
characteristics.text: 2019-10-15
characteristics.characteristic: collection date
characteristics.text: 87.1
characteristics.unit: %
characteristics.characteristic: completeness score
characteristics.text: CheckM
characteristics.characteristic: completeness software
characteristics.text: 0.46
characteristics.unit: %
characteristics.characteristic: contamination score
characteristics.text: This sample represents a metagenome-assembled genome assembled from the metagenomic run ERR4336989 of study ERP122587.
characteristics.characteristic: description
characteristics.text: Caecum
characteristics.characteristic: environmental medium
characteristics.text: Spain
characteristics.characteristic: geographic location (country and/or sea)
characteristics.text: 41.170048
characteristics.unit: DD
characteristics.characteristic: geographic location (latitude)
characteristics.text: 1.168491
characteristics.unit: DD
characteristics.characteristic: geographic location (longitude)
characteristics.text: metagenome-assembled genome
characteristics.characteristic: investigation type
characteristics.text: chicken gut metagenome
characteristics.characteristic: isolation_source
characteristics.text: Digestive tube
characteristics.characteristic: local environmental context
characteristics.text: chicken gut metagenome
characteristics.characteristic: metagenomic source
characteristics.text: Blastocystis hominis
characteristics.characteristic: organism
characteristics.text: Metagenomic raw reads, assemblies, and bins derived from HoloFood chicken caecum and ileum samples. Samples selected for this batch were randomised among trials (feed), age, and breed to overcome batch effect. The caecum samples in this project contributed to the chicken caecum MAG catalogue (project: PRJEB55374 [ERP140263]), and the ileum samples contributed to the chicken ileum MAG catalogue (project: PRJEB55375 [ERP140264]).
characteristics.characteristic: project name
characteristics.text: SAMEA7025277
characteristics.characteristic: sample derived from
characteristics.text: Blastocystis hominis
characteristics.characteristic: scientific_name
characteristics.text: DNBSEQ-G400
characteristics.characteristic: sequencing method
characteristics.text: The taxonomy of this Metagenome-Assembled Genome was originally computed with BAT, which assigned the following NCBI taxonomic annotation: 1;131567;2759;2698737;33634;2683628;2683629;42740;2547934;12967;12968
characteristics.characteristic: taxonomic classification
characteristics.text: multi-marker approach
characteristics.characteristic: taxonomic identity marker
characteristics.text: Metagenome-Assembled Genome: ERR4336989_bin.116_CONCOCT_v1.1.0_MAG
characteristics.characteristic: title