Yes
16S recovered
PROKKA (version 1.14.5)
16S recovery software
ERC000050
ENA-CHECKLIST
2023-11-30T09:25:08Z
ENA-FIRST-PUBLIC
2023-11-30T09:25:08Z
ENA-LAST-UPDATE
SAMEA114771445
External Id
Geomar Helmholtz Centre
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
2023-11-30T09:25:08Z
INSDC first public
2023-11-30T09:25:08Z
INSDC last update
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS17191994
SRA accession
40c0bc27-0899-48a6-a9e1-92a07206e7c8
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG
assembly software
coverage; graph; hic-mapping
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7); MetaTOR
binning software
aquatic biome
broad-scale environmental context
Manuel Maldonado
collected by
CEAB-CSIC
collecting institution
2021-02-01
collection date
97.69
%
completeness score
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
completeness software
0.0
%
contamination score
14
m
depth
adult sponge tissue
environmental medium
Spain
geographic location (country and/or sea)
41.67
DD
geographic location (latitude)
2.80
DD
geographic location (longitude)
Girona|Blanes
geographic location (region and locality)
rocky bottom
habitat
adult
host life stage
Agelas oroides
host scientific name
72715
host taxid
Manuel Maldonado
identified by
CEAB-CSIC
identifier_affiliation
metagenome-assembled genome
investigation type
Sponge: Agelas oroides
isolation_source
marine benthic biome
local environmental context
sponge metagenome
metagenomic source
62
number of standard tRNAs extracted
Dehalococcoidia bacterium
organism
WHOLE ORGANISM
organism part
ASG
project name
beneficial
relationship
SAMEA114771414
sample derived from
Dehalococcoidia bacterium
scientific_name
Pacbio Sequel II
sequencing method
GHC0000190
specimen id
NOT PROVIDED
specimen voucher
PROKKA (version 1.14.5)
tRNA extraction software
GTDB-TK (version 2.3.2); GTDB (release 214)
taxonomic classification
taxonomic novelty determined using RED
taxonomic identity marker
40c0bc27-0899-48a6-a9e1-92a07206e7c8-asg-MAGScoT_cleanbin_000082
title
odAgeOroi1.Dehalococcoidia_29
tolid