Yes
16S recovered
PROKKA (version 1.14.5)
16S recovery software
ERC000047
ENA-CHECKLIST
2023-11-28T09:30:07Z
ENA-FIRST-PUBLIC
2023-11-28T09:30:07Z
ENA-LAST-UPDATE
SAMEA114757186
External Id
Nova Southeastern University
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
2023-11-28T09:30:07Z
INSDC first public
2023-11-28T09:30:07Z
INSDC last update
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS17176874
SRA accession
4fd3a609-4b20-488f-a53c-3ffcb215da44
Submitter Id
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly quality
metaMDBG
assembly software
coverage; graph; hic-mapping
binning parameters
DASTOOL (version 1.1.5); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7)
binning software
aquatic biome
broad-scale environmental context
EUICHI HIROSE
collected by
UNIVERSITY OF THE RYUKYUS
collecting institution
2021-03-15
collection date
100
%
completeness score
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
completeness software
1.49
%
contamination score
0.5
m
depth
adult tunicate tissue
environmental medium
Japan
geographic location (country and/or sea)
26.71
DD
geographic location (latitude)
127.88
DD
geographic location (longitude)
Okinawa|Motobu|Back Reef at Bise
geographic location (region and locality)
Rubbles of dead coral branches
habitat
adult
host life stage
Trididemnum clinides
host scientific name
hermaphrodite
host sex
641091
host taxid
EUICHI HIROSE
identified by
UNIVERSITY OF THE RYUKYUS
identifier_affiliation
metagenome-assembled genome
investigation type
Tunicate: Trididemnum clinides
isolation_source
marine coral reef biome
local environmental context
sea squirt metagenome
metagenomic source
43
number of standard tRNAs extracted
Rhodospirillales bacterium
organism
WHOLE ORGANISM
organism part
ASG
project name
obligate symbiosis at least for host
relationship
SAMEA114757178
sample derived from
Rhodospirillales bacterium
scientific_name
Pacbio Sequel II
sequencing method
NSU0014301
specimen id
4
specimen voucher
PROKKA (version 1.14.5)
tRNA extraction software
GTDB-TK (version 2.3.2); GTDB (release 214)
taxonomic classification
taxonomic novelty determined using RED
taxonomic identity marker
4fd3a609-4b20-488f-a53c-3ffcb215da44-asg-maxbin2.002
title
kaTriClin1.Rhodospirillales_1
tolid