Yes
16S recovered
PROKKA (version 1.14.5)
16S recovery software
ERC000050
ENA-CHECKLIST
2023-11-30T10:11:24Z
ENA-FIRST-PUBLIC
2023-11-30T10:11:24Z
ENA-LAST-UPDATE
SAMEA114772030
External Id
Geomar Helmholtz Centre
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
2023-11-30T10:11:24Z
INSDC first public
2023-11-30T10:11:24Z
INSDC last update
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS17192579
SRA accession
47e97cd4-54a1-438a-b3e3-aee4295fde5d
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG
assembly software
coverage; graph; hic-mapping
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7); MetaTOR
binning software
aquatic biome
broad-scale environmental context
MAYA BRITSTEIN
collected by
University of Haifa
collecting institution
2013-12-23
collection date
97.76
%
completeness score
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
completeness software
0.0
%
contamination score
24
m
depth
adult sponge tissue
environmental medium
Israel
geographic location (country and/or sea)
29.50
DD
geographic location (latitude)
34.92
DD
geographic location (longitude)
Eilat
geographic location (region and locality)
coral reef
habitat
adult
host life stage
Pione vastifica
host scientific name
458513
host taxid
ILIA BURGSDORF | RINAT BAR SHALOM
identified by
University of Haifa Israel
identifier_affiliation
metagenome-assembled genome
investigation type
Sponge: Pione vastifica
isolation_source
marine coral reef biome
local environmental context
sponge metagenome
metagenomic source
41
number of standard tRNAs extracted
uncultured Candidatus Puniceispirillum sp.
organism
WHOLE ORGANISM
organism part
ASG
project name
SAMEA114772026
sample derived from
uncultured Candidatus Puniceispirillum sp.
scientific_name
Pacbio Sequel II
sequencing method
GHC0000220
specimen id
NOT PROVIDED
specimen voucher
PROKKA (version 1.14.5)
tRNA extraction software
GTDB-TK (version 2.1.1); GTDB (release 207_v2)
taxonomic classification
taxonomic novelty determined using RED
taxonomic identity marker
47e97cd4-54a1-438a-b3e3-aee4295fde5d-asg-MAGScoT_cleanbin_000004
title
odPioVast1.Puniceispirillum_sp_4
tolid