ERC000047
ENA-CHECKLIST
2023-11-27T00:32:36Z
ENA-FIRST-PUBLIC
2023-11-27T00:32:36Z
ENA-LAST-UPDATE
SAMEA114725141
External Id
Centre for Structural and Functional Genomics
INSDC center name
2023-11-27T00:32:36Z
INSDC first public
2023-11-27T00:32:36Z
INSDC last update
public
INSDC status
ERS17144000
SRA accession
SAP_bin919
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
MEGAHIT
assembly software
Tetranucleotide frequency and contig differential coverage
binning parameters
MetaBAT
binning software
lake
broad-scale environmental context
2018
collection date
86.05
%
completeness score
CheckM
completeness software
0
%
contamination score
This sample represents a MAG derived from the metagenomic sample ERS16257441
description
water
environmental medium
Canada
geographic location (country and/or sea)
missing: synthetic construct
DD
geographic location (latitude)
missing: synthetic construct
DD
geographic location (longitude)
Semi-Arid Plateaux ecozone
geographic location (region and locality)
lake water
isolation_source
lake surface water
local environmental context
lake water metagenome
metagenomic source
metagenome
organism
The LakePulse Metagenome-Assembled Genome catalogue
project name
ERS5372593,ERS5372594,ERS5372595,ERS5372596,ERS5372597,ERS5372598,ERS5372599,ERS5372600,ERS5372601,ERS5372602,ERS5372603,ERS5372604,ERS5372605,ERS5372606,ERS5372607,ERS5372608,ERS5372609,ERS5372610,ERS5372611,ERS5372612,ERS5372613
sample derived from
metagenome
scientific_name
120 bacterial markers (Genome Taxonomy Database)
taxonomic identity marker
LakePulse MAG SAP_bin919
title