ERC000050
ENA-CHECKLIST
2023-11-27T12:33:24Z
ENA-FIRST-PUBLIC
2023-11-27T12:33:24Z
ENA-LAST-UPDATE
SAMEA114749657
External Id
CEBITEC
INSDC center name
2023-11-27T12:33:24Z
INSDC first public
2023-11-27T12:33:24Z
INSDC last update
public
INSDC status
ERS17169249
SRA accession
bgp350_bin_006
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
MEGAHIT
assembly software
default
binning parameters
MetaBAT 2
binning software
anaerobic digestion
broad-scale environmental context
2017-02
collection date
79.72
%
completeness score
CheckM
completeness software
0.7
%
contamination score
Metagenomic bin based on a co-assembly of samples from 2-stage biogas digester
description
feedstock
environmental medium
Germany
geographic location (country and/or sea)
9.21
DD
geographic location (latitude)
52.64
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
biogas plant anaerobic digester
isolation_source
2 stage biogas digester
local environmental context
biogas fermenter metagenome
metagenomic source
uncultured Clostridia bacterium
organism
Taxonomic, functional and ecological inventory of 67 full-scale biogas digesters
project name
ERS15898928,ERS15898929,ERS15898930,ERS15898931,ERS15898932,ERS15898933
sample derived from
uncultured Clostridia bacterium
scientific_name
Illumina HiSeq 1500,Illumina MiSeq
sequencing method
bgp350_bin_006
title