Yes
16S recovered
PROKKA (version 1.14.5)
16S recovery software
ERC000050
ENA-CHECKLIST
2023-11-30T10:52:12Z
ENA-FIRST-PUBLIC
2023-11-30T10:52:12Z
ENA-LAST-UPDATE
SAMEA114772226
External Id
Geomar Helmholtz Centre
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
2023-11-30T10:52:12Z
INSDC first public
2023-11-30T10:52:12Z
INSDC last update
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS17192973
SRA accession
fa935aba-13d3-4dc7-83f5-acf5215313cd
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG
assembly software
coverage; graph; hic-mapping
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7)
binning software
aquatic biome
broad-scale environmental context
SALLY LEYS
collected by
University of Alberta
collecting institution
2021-02-06
collection date
96.28
%
completeness score
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
completeness software
4.25
%
contamination score
0.01
m
depth
adult sponge tissue
environmental medium
Canada
geographic location (country and/or sea)
53.53
DD
geographic location (latitude)
-113.53
DD
geographic location (longitude)
Edmonton | University of Alberta
geographic location (region and locality)
freshwater culture dish
habitat
juvenile
host life stage
Spongilla lacustris
host scientific name
not collected
host sex
6055
host taxid
SALLY LEYS
identified by
University of Alberta
identifier_affiliation
metagenome-assembled genome
investigation type
Sponge: Spongilla lacustris
isolation_source
freshwater lake biome
local environmental context
sponge metagenome
metagenomic source
86
number of standard tRNAs extracted
Undibacterium sp.
organism
WHOLE ORGANISM
organism part
ASG
project name
SAMEA114772225
sample derived from
Undibacterium sp.
scientific_name
Pacbio Sequel II
sequencing method
GHC0000126
specimen id
OCL2-050
specimen voucher
PROKKA (version 1.14.5)
tRNA extraction software
GTDB-TK (version 2.3.2); GTDB (release 214)
taxonomic classification
taxonomic classification defined by topology and ANI
taxonomic identity marker
fa935aba-13d3-4dc7-83f5-acf5215313cd-asg-MAGScoT_cleanbin_000005
title
odSpoLacu1.Undibacterium_sp_1
tolid