Yes
16S recovered
PROKKA (version 1.14.5)
16S recovery software
ERC000050
ENA-CHECKLIST
2023-11-30T09:08:04Z
ENA-FIRST-PUBLIC
2023-11-30T09:08:04Z
ENA-LAST-UPDATE
SAMEA114771413
External Id
Queen Mary University of London
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
2023-11-30T09:08:04Z
INSDC first public
2023-11-30T09:08:04Z
INSDC last update
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS17191962
SRA accession
dca89aed-a49e-48b4-bab9-18511050dfd7
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG
assembly software
NOT PROVIDED
barcoding center
coverage; graph
binning parameters
MetaBat (version 2.15-15-gd6ea400); DASTOOL (version 1.1.5)
binning software
aquatic biome
broad-scale environmental context
GREG ROUSE | CHARLOTTE SEID
collected by
SCRIPPS INSTITUTION OF OCEANOGRAPHY AT THE UNIVERSITY OF CALIFORNIA SAN DIEGO
collecting institution
2021-10-12
collection date
68.18
%
completeness score
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
completeness software
1.14
%
contamination score
0
m
depth
adult annelid tissue
environmental medium
USA
geographic location (country and/or sea)
32.87
DD
geographic location (latitude)
-117.25
DD
geographic location (longitude)
California | San Diego | Scripps Institution of Oceanography at the University of California San Diego | Marine Biology Research Division | Hubbs Hall, Greg Rouse Laboratory
geographic location (region and locality)
freshwater
habitat
adult
host life stage
Aeolosoma venustum
host scientific name
not collected
host sex
2890202
host taxid
GREG ROUSE
identified by
SCRIPPS INSTITUTION OF OCEANOGRAPHY AT THE UNIVERSITY OF CALIFORNIA SAN DIEGO
identifier_affiliation
metagenome-assembled genome
investigation type
Annelid: Aeolosoma venustum
isolation_source
freshwater biome
local environmental context
annelid metagenome
metagenomic source
35
number of standard tRNAs extracted
Phycisphaerales bacterium
organism
WHOLE ORGANISM
organism part
USA | likely near Carolina Biological Supply Company in North Carolina
original collection location
ASG
project name
SAMEA114771412
sample derived from
Phycisphaerales bacterium
scientific_name
Pacbio Sequel II
sequencing method
QMOUL0000024
specimen id
SIO:BIC:A13662
specimen voucher
PROKKA (version 1.14.5)
tRNA extraction software
GTDB-TK (version 2.3.2); GTDB (release 214)
taxonomic classification
taxonomic classification defined by topology and ANI
taxonomic identity marker
dca89aed-a49e-48b4-bab9-18511050dfd7-asg-bin.39
title
whAeoVenu5.Phycisphaerales_1
tolid