Yes
16S recovered
PROKKA (version 1.14.5)
16S recovery software
ERC000050
ENA-CHECKLIST
2023-11-27T10:29:52Z
ENA-FIRST-PUBLIC
2023-11-27T10:29:52Z
ENA-LAST-UPDATE
SAMEA114745643
External Id
Portland State University
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
2023-11-27T10:29:52Z
INSDC first public
2023-11-27T10:29:52Z
INSDC last update
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS17165235
SRA accession
1c87dfd9-41ac-43dd-858f-547ae4f9b843
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG
assembly software
PORTLAND STATE UNIVERSITY
barcoding center
coverage; graph
binning parameters
MetaBat (version 2.15-15-gd6ea400); DASTOOL (version 1.1.5)
binning software
aquatic biome
broad-scale environmental context
NOT COLLECTED
collected_by
Kamo Aquarium | Tsuruoka | Japan
collecting institution
2021-10-17
collection date
98.99
%
completeness score
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
completeness software
5.03
%
contamination score
adult jellyfish tissue
environmental medium
Japan
geographic location (country and/or sea)
not collected
DD
geographic location (latitude)
not collected
DD
geographic location (longitude)
Tsuruoka | Kamo Aquarium
geographic location (region and locality)
NOT COLLECTED
habitat
juvenile
host life stage
Netrostoma setouchianum
host scientific name
not collected
host sex
2929759
host taxid
IKEDA SHUHEI
identified_by
Kamo Aquarium | Tsuruoka | Japan
identifier_affiliation
metagenome-assembled genome
investigation type
Jellyfish: Netrostoma setouchianum
isolation_source
nan
local environmental context
jellyfish metagenome
metagenomic source
88
number of standard tRNAs extracted
Endozoicomonas atrinae
organism
WHOLE ORGANISM
organism part
2013-09-20
original collection date
Takeshima | Hiroshima | Japan
original collection location
ASG
project name
NOT COLLECTED
sample collection device or method
SAMEA114745642
sample derived from
Endozoicomonas atrinae
scientific_name
Pacbio Sequel II
sequencing method
PORT0000207
specimen_id
KNS＿B
specimen_voucher
PROKKA (version 1.14.5)
tRNA extraction software
GTDB-TK (version 2.3.2); GTDB (release 214)
taxonomic classification
ani_screen
taxonomic identity marker
1c87dfd9-41ac-43dd-858f-547ae4f9b843-asg-bin.54
title
jsNetSeto2.Endozoicomonas_atrinae_1
tolid