Yes
16S recovered
PROKKA (version 1.14.5)
16S recovery software
ERC000050
ENA-CHECKLIST
2023-11-27T13:51:53Z
ENA-FIRST-PUBLIC
2023-11-27T13:51:53Z
ENA-LAST-UPDATE
SAMEA114751369
External Id
Sanger Institute
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
2023-11-27T13:51:53Z
INSDC first public
2023-11-27T13:51:53Z
INSDC last update
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS17170962
SRA accession
af64610c-7abe-4e96-8885-7e36ac9b76ce
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG
assembly software
coverage; graph
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); MaxBin (version 2.7)
binning software
terrestrial biome
broad-scale environmental context
Philipp Resl
collected_by
Institue of Biology, University of Graz, Austria
collecting institution
2022-05-18
collection date
62.93
%
completeness score
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
completeness software
2.59
%
contamination score
adult lichen tissue
environmental medium
Austria
geographic location (country and/or sea)
46.74
DD
geographic location (latitude)
15.08
DD
geographic location (longitude)
Steiermark | Gemeinde Wielfresen | South of Wirtbartl Weg Wiel St. Oswald | ca. 800 m vor Gasthof Wirtbartl | ca. 1300 m a.s.l.
geographic location (region and locality)
Mixed forest with Fagus sylvatica, Picea abies and Pinus sylvestris. On side of decaying coniferous tree stump
habitat
vegetative structure
host life stage
Cladonia norvegica
host scientific name
other
host sex
2873768
host taxid
Philipp Resl
identified_by
Institue of Biology, University of Graz, Austria
identifier_affiliation
metagenome-assembled genome
investigation type
Lichen: Cladonia norvegica
isolation_source
woodland biome
local environmental context
lichen metagenome
metagenomic source
32
number of standard tRNAs extracted
Acidobacteriaceae bacterium
organism
WHOLE ORGANISM
organism part
ToL
project name
SAMEA114751368
sample derived from
Acidobacteriaceae bacterium
scientific_name
Pacbio Sequel II
sequencing method
ERGA PR AT 01
specimen_id
NOT PROVIDED
specimen_voucher
N
symbiont
PROKKA (version 1.14.5)
tRNA extraction software
GTDB-TK (version 2.3.2); GTDB (release 214)
taxonomic classification
taxonomic classification defined by topology and ANI
taxonomic identity marker
af64610c-7abe-4e96-8885-7e36ac9b76ce-asg-MAGScoT_cleanbin_000006
title
glClaNorv1.Acidobacteriaceae_1
tolid