Yes
16S recovered
PROKKA (version 1.14.5)
16S recovery software
ERC000047
ENA-CHECKLIST
2023-11-30T11:04:25Z
ENA-FIRST-PUBLIC
2023-11-30T11:04:25Z
ENA-LAST-UPDATE
SAMEA114772261
External Id
Geomar Helmholtz Centre
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
2023-11-30T11:04:25Z
INSDC first public
2023-11-30T11:04:25Z
INSDC last update
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS17193008
SRA accession
c6d3399b-28cd-477b-935f-92e0d5dfbea7
Submitter Id
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly quality
metaMDBG
assembly software
coverage; graph; hic-mapping
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7); MetaTOR
binning software
aquatic biome
broad-scale environmental context
Manuel Maldonado
collected by
CEAB-CSIC
collecting institution
2021-02-01
collection date
93.22
%
completeness score
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
completeness software
1.11
%
contamination score
14
m
depth
adult sponge tissue
environmental medium
Spain
geographic location (country and/or sea)
41.67
DD
geographic location (latitude)
2.80
DD
geographic location (longitude)
Girona|Blanes
geographic location (region and locality)
rocky bottom
habitat
adult
host life stage
Oscarella lobularis
host scientific name
121494
host taxid
Manuel Maldonado
identified by
CEAB-CSIC
identifier_affiliation
metagenome-assembled genome
investigation type
Sponge: Oscarella lobularis
isolation_source
marine benthic biome
local environmental context
sponge metagenome
metagenomic source
43
number of standard tRNAs extracted
Gammaproteobacteria bacterium
organism
WHOLE ORGANISM
organism part
ASG
project name
SAMEA114772239
sample derived from
Gammaproteobacteria bacterium
scientific_name
Pacbio Sequel II
sequencing method
GHC0000183
specimen id
NOT PROVIDED
specimen voucher
PROKKA (version 1.14.5)
tRNA extraction software
GTDB-TK (version 2.1.1); GTDB (release 207_v2)
taxonomic classification
ANI
taxonomic identity marker
c6d3399b-28cd-477b-935f-92e0d5dfbea7-asg-MAGScoT_cleanbin_000014
title
ooOscLobu1.Gammaproteobacteria_2
tolid