Yes
16S recovered
PROKKA (version 1.14.5)
16S recovery software
ERC000050
ENA-CHECKLIST
2023-11-27T09:43:17Z
ENA-FIRST-PUBLIC
2023-11-27T09:43:17Z
ENA-LAST-UPDATE
SAMEA114745601
External Id
Dalhousie University
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
2023-11-27T09:43:17Z
INSDC first public
2023-11-27T09:43:17Z
INSDC last update
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS17165193
SRA accession
018319a4-ce29-4a59-b7db-12d73b409573
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG
assembly software
coverage; graph; hic-mapping
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7)
binning software
aquatic biome
broad-scale environmental context
LUCIE GALLOT-LAVALLEE
collected by
DALHOUSIE UNIVERSITY
collecting institution
2021-05-04
collection date
98.5
%
completeness score
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
completeness software
0.2
%
contamination score
CCAP 1560/4
culture_or_strain_id
amoeba culture
environmental medium
Canada
geographic location (country and/or sea)
44.64
DD
geographic location (latitude)
-63.58
DD
geographic location (longitude)
HALIFAX | DALHOUSIE UNIVERSITY
geographic location (region and locality)
Dalhousie University laboratory
habitat
Paramoeba pemaquidensis
host scientific name
180228
host taxid
Culture Collection of Algae and Protozoa
identified by
Culture Collection of Algae and Protozoa
identifier_affiliation
metagenome-assembled genome
investigation type
Amoeba: Paramoeba pemaquidensis
isolation_source
marine biome
local environmental context
protist metagenome
metagenomic source
49
number of standard tRNAs extracted
Devosia sp.
organism
WHOLE ORGANISM
organism part
ToL
project name
SAMEA114745600
sample derived from
Devosia sp.
scientific_name
Pacbio Sequel II
sequencing method
DU0000003
specimen id
DU0000003-1.png
specimen voucher
N
symbiont
PROKKA (version 1.14.5)
tRNA extraction software
GTDB-TK (version 2.3.2); GTDB (release 214)
taxonomic classification
taxonomic classification defined by topology and ANI
taxonomic identity marker
018319a4-ce29-4a59-b7db-12d73b409573-asg-MAGScoT_cleanbin_000003
title
paParPema1.Devosia_sp_1
tolid