ERC000047
ENA-CHECKLIST
2023-11-27T00:32:38Z
ENA-FIRST-PUBLIC
2023-11-27T00:32:38Z
ENA-LAST-UPDATE
SAMEA114724771
External Id
Centre for Structural and Functional Genomics
INSDC center name
2023-11-27T00:32:38Z
INSDC first public
2023-11-27T00:32:38Z
INSDC last update
public
INSDC status
ERS17143630
SRA accession
P_bin1680
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
MEGAHIT
assembly software
Tetranucleotide frequency and contig differential coverage
binning parameters
MetaBAT
binning software
lake
broad-scale environmental context
2018
collection date
77.84
%
completeness score
CheckM
completeness software
2.31
%
contamination score
This sample represents a MAG derived from the metagenomic sample ERS16257440
description
water
environmental medium
Canada
geographic location (country and/or sea)
missing: synthetic construct
DD
geographic location (latitude)
missing: synthetic construct
DD
geographic location (longitude)
Prairies ecozone
geographic location (region and locality)
lake water
isolation_source
lake surface water
local environmental context
lake water metagenome
metagenomic source
metagenome
organism
The LakePulse Metagenome-Assembled Genome catalogue
project name
ERS5372553,ERS5372554,ERS5372555,ERS5372556,ERS5372557,ERS5372558,ERS5372559,ERS5372560,ERS5372561,ERS5372562,ERS5372563,ERS5372564,ERS5372565,ERS5372566,ERS5372567,ERS5372568,ERS5372569,ERS5372570,ERS5372571,ERS5372572,ERS5372573,ERS5372574,ERS5372575,ERS5372576,ERS5372577,ERS5372578,ERS5372579,ERS5372580,ERS5372581,ERS5372582,ERS5372583,ERS5372584,ERS5372585,ERS5372586,ERS5372587,ERS5372588,ERS5372589,ERS5372590,ERS5372591,ERS5372592
sample derived from
metagenome
scientific_name
120 bacterial markers (Genome Taxonomy Database)
taxonomic identity marker
LakePulse MAG P_bin1680
title