2024-03-04
ENA first public
ERC000013
ENA-CHECKLIST
SAMEA115099071
External Id
Ifremer
INSDC center name
2024-01-12T10:52:21Z
INSDC last update
public
INSDC status
ERS17734198
SRA accession
sam_Rem-6-Hep-Cr118
Submitter Id
16S rRNA
TARGETED_LOCI
5'-CTTTCCCTACACGACGCTCTTCCGATCT-3' ; 5'-GGAGTTCAGACGTGTGCTCTTCCGATCT-3'
adapters
hydrothermal vent
broad-scale environmental context
SeBiMER
broker name
ifremer
collecting institution
2017-04-07
collection date
crustacean metagenome
common name
3650
m
depth
adult
dev_stage
organ
environmental medium
host-associated
environmental package
yes
environmental_sample
Atlantic Ocean
geographic location (country and/or sea)
26.1
DD
geographic location (latitude)
-44.8
DD
geographic location (longitude)
Mid-Atlantic Ridge
geographic location (region and locality)
bacteria_archaea
investigation type
Cr118
isolate
hydrothermal vent
isolation_source
arthropoda
local environmental context
GTGGGG
multiplex identifiers
crustacean metagenome
organism
WHOI341 : 5'-CCTACGGGNGGCWGCAG-3 ; WHOI785 : 5-GACTACHVGGGTATCTAATCC-3
pcr primers
rimicaris_juveniles
project name
16S partial rRNA (V3-V4) of Rimicaris chacei hepatopancreas symbionts, adult from TAG, amplified by Nested PCR.
sample_description
Rem-6-Hep-Cr118
sample_name
crustacean metagenome
scientific_name
Sequencing by synthesis (Illumina)
sequencing method
16S rRNA
target gene
V3V4
target subfragment
hepatopancreas
tissue_type
16S partial rRNA (V3-V4) of Rimicaris chacei hepatopancreas symbionts, specimen Cr118
title