2024-03-05
ENA first public
ERC000047
ENA-CHECKLIST
EMG
INSDC center name
public
INSDC status
ERS18322583
SRA accession
ERR594411_concoct_124
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaspades_v3.14.1
assembly software
default
binning parameters
MGnify-genomes-generation-pipeline_v1.0.0
binning software
water
broad-scale environmental context
EBI-EMG
broker name
not provided
collection date
99.63
%
completeness score
CheckM2_v1.0.1
completeness software
0.05
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR594411 of study ERP003708.
description
tara
environmental medium
not provided
geographic location (country and/or sea)
-30.1367
DD
geographic location (latitude)
-43.2899
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
marine metagenome
isolation_source
ocean
local environmental context
marine metagenome
metagenomic source
Thalassospira xiamenensis
organism
Seawater from different depths was precipitaded then filtered to retain small particle sizes (Virus particles). The DNA was extracted and submitted to high throughput sequencing.
project name
SAMEA2621271
sample derived from
Thalassospira xiamenensis
scientific_name
Illumina HiSeq 2000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: ERR594411_concoct_124
title