2024-03-05
ENA first public
ERC000047
ENA-CHECKLIST
EMG
INSDC center name
public
INSDC status
ERS18258241
SRA accession
SRR1790644_concoct_11
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
spades_v3.11.1
assembly software
default
binning parameters
MGnify-genomes-generation-pipeline_v1.0.0
binning software
aqua
broad-scale environmental context
EBI-EMG
broker name
2011-05-13
collection date
84.47
%
completeness score
CheckM2_v1.0.1
completeness software
3.82
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR1790644 of study SRP039390.
description
amazon
environmental medium
Brazil
geographic location (country and/or sea)
-1.519367
DD
geographic location (latitude)
-48.91795
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
aquatic metagenome
isolation_source
water
local environmental context
aquatic metagenome
metagenomic source
uncultured bacterium
organism
This project focuses on the Amazon River-to-tropical Atlantic Ocean continuum because of both its immense scale and its apparent sensitivity to climate variability and anthropogenic forcing. The river’s effect on the ocean depends not only on the river hydrology, but what the river carries and how those components are modified during transit from their terrestrial or aquatic origins. We brought together limnologists and oceanographers in an integrated project to improve our understanding of carbon exchange between the atmosphere and this tropical river continuum, focusing on the lower reach, nearshore, and offshore tropical Atlantic, with the goal of improving predictive capabilities under differing climate change scenarios.
project name
SAMN03252810
sample derived from
uncultured bacterium
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRR1790644_concoct_11
title