PROKKA (version 1.14.5)
16S recovery software
Yes
16s recovered
2024-04-01
ENA first public
ERC000047
ENA-CHECKLIST
Nova Southeastern University
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS18635554
SRA accession
4740a924-cce1-477a-b863-f2717b2bed98
Submitter Id
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly quality
metaMDBG
assembly software
coverage; graph; hic-mapping
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7); MetaTOR
binning software
aquatic biome
broad-scale environmental context
NIKOLOAS SCHIZAS| JAAZIEL GARCIA HERNANDEZ| ALEJANDRO GONZALEZ| MARIA DEL PILAR| DANIEL TOLEDO
collected_by
UNIVERSITY OF PUERTO RICO MAYAGUEZ
collecting institution
2021-05-10
collection date
94.01
%
completeness score
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
completeness software
2.71
%
contamination score
1.0
m
depth
adult hydrozoan tissue
environmental medium
Puerto Rico
geographic location (country and/or sea)
17.96
DD
geographic location (latitude)
-67.05
DD
geographic location (longitude)
Cayo Enrique
geographic location (region and locality)
coral reef
habitat
adult
host life stage
Millepora complanata
host scientific name
not collected
host sex
544496
host taxid
NIKOLOAS SCHIZAS| JAAZIEL GARCIA HERNANDEZ| ALEJANDRO GONZALEZ
identified_by
UNIVERSITY OF PUERTO RICO MAYAGUEZ
identifier_affiliation
metagenome-assembled genome
investigation type
Hydrozoan: Millepora complanata
isolation_source
marine coral reef biome
local environmental context
hydrozoan metagenome
metagenomic source
42
number of standard tRNAs extracted
Gammaproteobacteria bacterium
organism
WHOLE ORGANISM
organism part
ASG
project name
SAMEA115458483
sample derived from
Gammaproteobacteria bacterium
scientific_name
Pacbio Sequel II
sequencing method
NSU0055102
specimen_id
Sanger Institute Genome PR22
specimen_voucher
PROKKA (version 1.14.5)
tRNA extraction software
GTDB-TK (version 2.3.2); GTDB (release 214)
taxonomic classification
taxonomic classification fully defined by topology
taxonomic identity marker
4740a924-cce1-477a-b863-f2717b2bed98-asg-MAGScoT_cleanbin_000005
title
jhMilComp2.Gammaproteobacteria_2
tolid