PROKKA (version 1.14.5)
16S recovery software
Yes
16s recovered
2024-04-01
ENA first public
ERC000047
ENA-CHECKLIST
Nova Southeastern University
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS18635553
SRA accession
039cee20-11c1-41d0-9979-20d2ced50fa6
Submitter Id
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly quality
metaMDBG
assembly software
coverage; graph; hic-mapping
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7); MetaTOR
binning software
aquatic biome
broad-scale environmental context
NIKOLOAS SCHIZAS| JAAZIEL GARCIA HERNANDEZ| ALEJANDRO GONZALEZ| MARIA DEL PILAR| DANIEL TOLEDO
collected_by
UNIVERSITY OF PUERTO RICO MAYAGUEZ
collecting institution
2021-05-10
collection date
95.76
%
completeness score
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
completeness software
0.81
%
contamination score
1.0
m
depth
adult hydrozoan tissue
environmental medium
Puerto Rico
geographic location (country and/or sea)
17.96
DD
geographic location (latitude)
-67.05
DD
geographic location (longitude)
Cayo Enrique
geographic location (region and locality)
coral reef
habitat
adult
host life stage
Millepora complanata
host scientific name
not collected
host sex
544496
host taxid
NIKOLOAS SCHIZAS| JAAZIEL GARCIA HERNANDEZ| ALEJANDRO GONZALEZ
identified_by
UNIVERSITY OF PUERTO RICO MAYAGUEZ
identifier_affiliation
metagenome-assembled genome
investigation type
Hydrozoan: Millepora complanata
isolation_source
marine coral reef biome
local environmental context
hydrozoan metagenome
metagenomic source
46
number of standard tRNAs extracted
Brevundimonas sp.
organism
WHOLE ORGANISM
organism part
ASG
project name
SAMEA115458483
sample derived from
Brevundimonas sp.
scientific_name
Pacbio Sequel II
sequencing method
NSU0055102
specimen_id
Sanger Institute Genome PR22
specimen_voucher
PROKKA (version 1.14.5)
tRNA extraction software
GTDB-TK (version 2.3.2); GTDB (release 214)
taxonomic classification
ani_screen
taxonomic identity marker
039cee20-11c1-41d0-9979-20d2ced50fa6-asg-MAGScoT_cleanbin_000004
title
jhMilComp2.Brevundimonas_sp_1
tolid