PROKKA (version 1.14.5)
16S recovery software
Yes
16s recovered
2024-04-01
ENA first public
ERC000047
ENA-CHECKLIST
Geomar Helmholtz Centre
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS18635591
SRA accession
30f2c99d-7387-4e76-9980-56adfd487cdc
Submitter Id
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly quality
metaMDBG
assembly software
coverage; graph; hic-mapping
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7); MetaTOR
binning software
aquatic biome
broad-scale environmental context
Manuel Maldonado
collected_by
CEAB-CSIC
collecting institution
2021-02-01
collection date
92.87
%
completeness score
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
completeness software
3.53
%
contamination score
14
m
depth
adult sponge tissue
environmental medium
Spain
geographic location (country and/or sea)
41.67
DD
geographic location (latitude)
2.80
DD
geographic location (longitude)
Girona|Blanes
geographic location (region and locality)
rocky bottom
habitat
adult
host life stage
Axinella damicornis
host scientific name
not applicable
host sex
72671
host taxid
Manuel Maldonado
identified_by
CEAB-CSIC
identifier_affiliation
metagenome-assembled genome
investigation type
Sponge: Axinella damicornis
isolation_source
marine benthic biome
local environmental context
sponge metagenome
metagenomic source
38
number of standard tRNAs extracted
Pirellulales bacterium
organism
WHOLE ORGANISM
organism part
ASG
project name
unknown
relationship
SAMEA115458491
sample derived from
Pirellulales bacterium
scientific_name
Pacbio Sequel II
sequencing method
GHC0000182
specimen_id
NOT PROVIDED
specimen_voucher
PROKKA (version 1.14.5)
tRNA extraction software
GTDB-TK (version 2.3.2); GTDB (release 214)
taxonomic classification
ani_screen
taxonomic identity marker
30f2c99d-7387-4e76-9980-56adfd487cdc-asg-MAGScoT_cleanbin_000025
title
odAxiDami1.Pirellulales_1
tolid