PROKKA (version 1.14.5)
16S recovery software
Yes
16s recovered
2024-04-02
ENA first public
ERC000047
ENA-CHECKLIST
University of Vienna (Mollusc)
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS18675531
SRA accession
8c9d4bc5-c036-4ce1-8c35-2cb9244593b9
Submitter Id
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly quality
metaMDBG
assembly software
UNIVERSITY OF VIENNA (MOLLUSC)
barcoding center
coverage; graph
binning parameters
MetaBat (version 2.15-15-gd6ea400); DASTOOL (version 1.1.5)
binning software
aquatic biome
broad-scale environmental context
BENEDICT YUEN
collected_by
UNIVERSITY OF VIENNA
collecting institution
2021-07-08
collection date
99.56
%
completeness score
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
completeness software
0.31
%
contamination score
2
m
depth
adult bivalve tissue
environmental medium
Austria
geographic location (country and/or sea)
45.52
DD
geographic location (latitude)
13.58
DD
geographic location (longitude)
VIENNA | UNIVERSITY OF VIENNA
geographic location (region and locality)
Cymodocea nodosa meadow next to a sailing club and public beach (high anthropogenic impact), muddy highly sulphidic sediment
habitat
adult
host life stage
Anodontia fragilis
host scientific name
not collected
host sex
244460
host taxid
BENEDICT YUEN
identified_by
UNIVERSITY OF VIENNA
identifier_affiliation
metagenome-assembled genome
investigation type
Bivalve: Anodontia fragilis
isolation_source
marine benthic biome
local environmental context
mollusc metagenome
metagenomic source
53
number of standard tRNAs extracted
Rhodococcus qingshengii
organism
WHOLE ORGANISM
organism part
2021-07-06
original collection date
SLOVENIA | PIRAN |BERNARDIN SQUARE
original collection location
ASG
project name
SAMEA115460582
sample derived from
Rhodococcus qingshengii
scientific_name
Pacbio Sequel II
sequencing method
VIEM1010001
specimen_id
NOT COLLECTED
specimen_voucher
PROKKA (version 1.14.5)
tRNA extraction software
GTDB-TK (version 2.3.2); GTDB (release 214)
taxonomic classification
ani_screen
taxonomic identity marker
8c9d4bc5-c036-4ce1-8c35-2cb9244593b9-asg-bin.283
title
xbAnoFrag1.Rhodococcus_qingshengii_1
tolid