PROKKA (version 1.14.5)
16S recovery software
Yes
16s recovered
2024-04-02
ENA first public
ERC000050
ENA-CHECKLIST
University of Vienna (Mollusc)
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS18675828
SRA accession
6dabea1c-7741-48bc-a34a-7d6fb9ada6bf
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG
assembly software
NOT PROVIDED
barcoding center
coverage; graph
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); MaxBin (version 2.7)
binning software
aquatic biome
broad-scale environmental context
LAETITIA WILKINS |. BENEDICT YUEN
collected_by
MPI FOR MARINE MICROBIOLOGY | UNIVERSITY OF VIENNA
collecting institution
2021-11-15
collection date
85.96
%
completeness score
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
completeness software
0.03
%
contamination score
adult bivalve tissue
environmental medium
Austria
geographic location (country and/or sea)
48.19
DD
geographic location (latitude)
16.40
DD
geographic location (longitude)
VIENNA | UNIVERSITY OF VIENNA
geographic location (region and locality)
intertidal, rocky rubble, mud, macroalgae
habitat
adult
host life stage
Ctena cf. galapagana NHMUK 20210086
host scientific name
not collected
host sex
2892552
host taxid
John Taylor
identified_by
NATURAL HISTORY MUSEUM | LONDON | UK
identifier_affiliation
metagenome-assembled genome
investigation type
Bivalve: Ctena cf. galapagana NHMUK 20210086
isolation_source
marine benthic biome
local environmental context
mollusc metagenome
metagenomic source
48
number of standard tRNAs extracted
Rhodococcus qingshengii
organism
WHOLE ORGANISM
organism part
2021-11-08
original collection date
COSTA RICA | GUANACASTE | BAHIA SANTA ELENA
original collection location
10.912658
DD
original geographic location (latitude)
-85.798925
DD
original geographic location (longitude)
ASG
project name
Shovel
sample collection method
SAMEA115460587
sample derived from
Rhodococcus qingshengii
scientific_name
Pacbio Sequel II
sequencing method
VIEM1100001
specimen_id
NOT_COLLECTED
specimen_voucher
PROKKA (version 1.14.5)
tRNA extraction software
GTDB-TK (version 2.3.2); GTDB (release 214)
taxonomic classification
ani_screen
taxonomic identity marker
6dabea1c-7741-48bc-a34a-7d6fb9ada6bf-asg-MAGScoT_cleanbin_000006
title
xbCteSpea1.Rhodococcus_qingshengii_1
tolid