2024-04-03
ENA first public
ERC000047
ENA-CHECKLIST
SAMEA115167657
External Id
EMG
INSDC center name
2024-01-31T10:35:50Z
INSDC last update
public
INSDC status
ERS18019834
SRA accession
SRR13485167_concoct_26
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaspades_v3.15.3
assembly software
default
binning parameters
MGnify-genomes-generation-pipeline_v1.0.0
binning software
environmental
broad-scale environmental context
EBI-EMG
broker name
2018-11
collection date
common name
100
%
completeness score
CheckM2_v1.0.1
completeness software
0.2
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR13485167 of study SRP302406.
description
marine
environmental medium
Pacific Ocean
geographic location (country and/or sea)
24.52167
DD
geographic location (latitude)
126.165
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
marine metagenome
isolation_source
aquatic
local environmental context
marine metagenome
metagenomic source
uncultured Gammaproteobacteria bacterium
organism
Illumina MiSeq sequencing: 16S rRNA metagenomic sequencing of the deep sea mooring chain surface: link 1 inner
project name
SAMN17377529
sample derived from
uncultured Gammaproteobacteria bacterium
scientific_name
Illumina MiSeq
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRR13485167_concoct_26
title