PROKKA (version 1.14.5)
16S recovery software
Yes
16s recovered
2024-04-03
ENA first public
ERC000050
ENA-CHECKLIST
University of California
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS18692646
SRA accession
0921f751-b557-4e8e-94b7-44b0433189a2
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG
assembly software
UNIVERSITY OF CALIFORNIA
barcoding center
coverage; graph; hic-mapping
binning parameters
DASTOOL (version 1.1.5); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7); MetaTOR
binning software
aquatic biome
broad-scale environmental context
Michael Dawson
collected_by
UC Merced
collecting institution
2022-01-08
collection date
96.62
%
completeness score
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
completeness software
0
%
contamination score
1.5
m
depth
adult jellyfish tissue
environmental medium
Palau
geographic location (country and/or sea)
7.16
DD
geographic location (latitude)
134.38
DD
geographic location (longitude)
Koror | Ongeim'l Tketau
geographic location (region and locality)
Marine Lake
habitat
adult
host life stage
Aurelia sp. 4 Dawson et al 2005
host scientific name
not collected
host sex
2790877
host taxid
Michael Dawson
identified_by
UC Merced
identifier_affiliation
metagenome-assembled genome
investigation type
Jellyfish: Aurelia sp. 4 Dawson et al 2005
isolation_source
marine biome
local environmental context
jellyfish metagenome
metagenomic source
29
number of standard tRNAs extracted
Mycoplasmataceae bacterium
organism
WHOLE ORGANISM
organism part
2022-01-08
original collection date
Palau | Koror | Ongeim'l Tketau
original collection location
7.161
DD
original geographic location (latitude)
134.3764
DD
original geographic location (longitude)
ASG
project name
by hand
sample collection method
SAMEA115466159
sample derived from
Mycoplasmataceae bacterium
scientific_name
Pacbio Sequel II
sequencing method
UCALI0000022
specimen_id
NOT_APPLICABLE
specimen_voucher
PROKKA (version 1.14.5)
tRNA extraction software
GTDB-TK (version 2.3.2); GTDB (release 214)
taxonomic classification
taxonomic novelty determined using RED
taxonomic identity marker
0921f751-b557-4e8e-94b7-44b0433189a2-asg-maxbin2.006
title
jsAurSpec1.Mycoplasmataceae_1
tolid