PROKKA (version 1.14.5)
16S recovery software
Yes
16s recovered
2024-04-04
ENA first public
ERC000047
ENA-CHECKLIST
Queen Mary University of London
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS18703185
SRA accession
6b04fa99-16e8-44f3-a272-62679c64fc9f
Submitter Id
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly quality
metaMDBG
assembly software
NOT PROVIDED
barcoding center
coverage; graph
binning parameters
MetaBat (version 2.15-15-gd6ea400); DASTOOL (version 1.1.5)
binning software
aquatic biome
broad-scale environmental context
PHIL ZEROFSKI
collected_by
SCRIPPS INSTITUTION OF OCEANOGRAPHY AT THE UNIVERSITY OF CALIFORNIA SAN DIEGO
collecting institution
not provided
collection date
92.73
%
completeness score
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
completeness software
1.07
%
contamination score
adult annelid tissue
environmental medium
USA
geographic location (country and/or sea)
32.83
DD
geographic location (latitude)
-117.29
DD
geographic location (longitude)
California | offshore San Diego
geographic location (region and locality)
Seafloor. Associated with sea urchins Strongylocentrotus purpuratus.
habitat
adult
host life stage
Flabelligera commensalis
host scientific name
not collected
host sex
996417
host taxid
GREG ROUSE
identified_by
SCRIPPS INSTITUTION OF OCEANOGRAPHY AT THE UNIVERSITY OF CALIFORNIA SAN DIEGO
identifier_affiliation
metagenome-assembled genome
investigation type
Annelid: Flabelligera commensalis
isolation_source
marine benthic biome
local environmental context
annelid metagenome
metagenomic source
33
number of standard tRNAs extracted
uncultured Polaribacter sp.
organism
WHOLE ORGANISM
organism part
ASG
project name
SIO:BIC:A14192
proxy voucher
https://sioapps.ucsd.edu/collections/bi/catalog/A14192/
proxy voucher url
hand-collected via SCUBA diving
sample collection method
SAMEA115468697
sample derived from
uncultured Polaribacter sp.
scientific_name
Pacbio Sequel II
sequencing method
QMOUL0000161
specimen_id
NOT_APPLICABLE
specimen_voucher
PROKKA (version 1.14.5)
tRNA extraction software
GTDB-TK (version 2.3.2); GTDB (release 214)
taxonomic classification
taxonomic novelty determined using RED
taxonomic identity marker
6b04fa99-16e8-44f3-a272-62679c64fc9f-asg-bin.204
title
wfFlaComm2.Polaribacter_sp_1
tolid
https://ror.org/04v7hvq31
voucher institution url