2024-04-10
ENA first public
ERC000047
ENA-CHECKLIST
SAMEA14028511
External Id
MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY
INSDC center name
2022-04-10T07:15:27Z
INSDC last update
public
INSDC status
ERS11631745
SRA accession
FRAM_RAS_EGC1617_bin5
Submitter Id
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly quality
Flye v2.8.3
assembly software
Vamb was run in three different modes with the following parameters: set1 -l 32 -n 512 512, set2 -l 24 -n 384 384 and set3 -l 40 -n 768 768
binning parameters
Vamb v3.0.2
binning software
2017-05-26
collection date
99.33
%
completeness score
CheckM v1.0.13
completeness software
1.55
%
contamination score
This sample represents a manually-refined metagenome-assembled genome recovered from a PacBio HiFi read metagenome of a water column sample in the Fram Strait. The metagenome sample and related assembly can be found under ERS11624918,ERR9575718
description
marine biome [ENVO:00000447]
environment (biome)
marine photic zone [ENVO:00000209]
environment (feature)
sea water [ENVO:00002149]
environment (material)
Arctic Ocean
geographic location (country and/or sea)
78.83
DD
geographic location (latitude)
-2.79
DD
geographic location (longitude)
metagenome
investigation type
sea water
isolation_source
marine metagenome
metagenomic source
uncultured Colwellia sp.
organism
FRAM_RAS_EGC_metagenomes
project name
ERS11624918,ERR9575718
sample derived from
uncultured Colwellia sp.
scientific_name
PacBio Sequel II
sequencing method
16S gene and multi-marker approach
taxonomic identity marker
Fram Strait water column MAG - FRAM_RAS_EGC1617_bin5
title