2024-04-12
ENA first public
ERC000011
ENA-CHECKLIST
SAMEA14074554
External Id
Marine College, Shandong University
INSDC center name
2022-04-12T08:03:41Z
INSDC last update
public
INSDC status
ERS11677785
SRA accession
S4_Bin_METABAT__97_1
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
MEGAHIT v1.2.9
assembly software
anvi'o 6.2 default parameters, DASTOOL with --search-engine diamond
binning parameters
CONCOCT, MAXBIN2,METABAT2, refined with dastool and manually with anvi'o 6.2
binning software
2019-08-01
collection_date
85.16
completeness score
checkM v1.1.3
completeness software
2.8
contamination score
seawater was pumped into a 500 L sterile sampling bags, brought ashore, subsequently filtered through 0.2 μm - pore-size polycarbonate filters, frozen at -80°C.
description
marine biome [ENVO:00000447]
environment (biome)
microbial feature [ENVO:00002150]
environment (feature)
coastal sea water [ENVO:00002150]
environment (material)
China
geographic location (country and/or sea)
37.562
geographic location (latitude)
122.121
geographic location (longitude)
metagenome-assembled genome
investigation type
Seawater
isolation_source
marine metagenome
metagenomic source
uncultured Flavobacteriaceae bacterium
organism
Metagenomes of marine macroalgae, surrounding seawater and surrounding sediments
project name
ERS11025028
sample derived from
uncultured Flavobacteriaceae bacterium
scientific_name
Illumina Nova-PE150
sequencing method
multi-marker approach (GTDB-tk v1.03, GTDB v95)
taxonomic identity marker
S4_Bin_METABAT__97_1
title