2024-04-18
ENA first public
ERC000047
ENA-CHECKLIST
SAMEA14447362
External Id
Biology Centre CAS
INSDC center name
2022-05-24T13:45:05Z
INSDC last update
public
INSDC status
ERS12066188
SRA accession
JJ-MIR1-432-1-mx-bin678
Submitter Id
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly quality
MEGAHIT
assembly software
coverage and kmer
binning parameters
MetaBAT2
binning software
2020-09-30
collection date
100
%
completeness score
checkm
completeness software
0.27
%
contamination score
JJ-MIR1-432-1-mx-bin678 - Bacteria; Cyanobacteria; Chroococcales; Aphanothecaceae; Aphanothece; Aphanothece minutissima
description
freshwater lake
environment (biome)
lake
environment (feature)
fresh water
environment (material)
Czech Republic
geographic location (country and/or sea)
49.00537682
DD
geographic location (latitude)
14.54017473
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
Freshwater lake
isolation_source
freshwater metagenome
metagenomic source
Aphanothece cf. minutissima CCALA 015
organism
PRJEB49198
project name
ERS11624170
sample derived from
Aphanothece cf. minutissima CCALA 015
scientific_name
Illumina NovaSeq 6000
sequencing method
multi-marker approach
taxonomic identity marker
ERS11624170
title