2024-04-18
ENA first public
ERC000047
ENA-CHECKLIST
SAMEA14447048
External Id
Biology Centre CAS
INSDC center name
2022-05-24T13:45:01Z
INSDC last update
public
INSDC status
ERS12065874
SRA accession
JJ-JE53-10-013-mx-bin555
Submitter Id
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly quality
MEGAHIT
assembly software
coverage and kmer
binning parameters
MetaBAT2
binning software
2005-08-01
collection date
98.89
%
completeness score
checkm
completeness software
0.61
%
contamination score
JJ-JE53-10-013-mx-bin555 - Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter
description
freshwater lake
environment (biome)
lake
environment (feature)
fresh water
environment (material)
Czech Republic
geographic location (country and/or sea)
50.06217876
DD
geographic location (latitude)
12.43189688
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
Freshwater lake
isolation_source
freshwater metagenome
metagenomic source
Rhodobacter maris
organism
PRJEB49198
project name
ERS11624111
sample derived from
Rhodobacter maris
scientific_name
Illumina NovaSeq 6000
sequencing method
multi-marker approach
taxonomic identity marker
ERS11624111
title