SAMN31929209
External Id
Virginia Division of Consolidated Laboratory Services Sequencing Submission Group
INSDC center name
2022-11-29T00:00:00Z
INSDC first public
2022-11-29T14:00:06.326Z
INSDC last update
live
INSDC status
SARS-CoV-2: wastewater surveillance
NCBI submission model
SARS-CoV-2.wwsurv.1.0
NCBI submission package
ERS19177290
SRA accession
Virginia Division of Consolidated Laboratory Services
collected_by
2022-05-31
collection_date
07:30 - 07:30
collection_time
100mL
collection_volume
innovaprep ultrafiltration
concentration_method
SARS-CoV-2 Standard spiked with MHV
extraction_control
zymo quick-rna viral kit
extraction_method
USA: Virginia
geo_loc_name
wastewater
isolation_source
wastewater metagenome
http://purl.obolibrary.org/obo/NCBITaxon_527639
organism
GenomeTrakr; LFFM ww project
project_name
public health surveillance institution-level
purpose_of_ww_sampling
diversity of mutations across entire genome
purpose_of_ww_sequencing
Virginia Division of Consolidated Laboratory Services
sequenced_by
Not Applicable
specimen_processing
Concentrating pipette
specimen_processing_details
SARS-CoV-2: wastewater surveillance
title
1003000
ww_flow
Not Collected
ww_population
Not Collected
ww_population_source
https://www.bio-rad.com/sites/default/files/webroot/web/pdf/lsr/literature/10000142158.pdf
ww_processing_protocol
24
ww_sample_duration
post grit removal
ww_sample_matrix
food or meat processing plant
ww_sample_site
composite
ww_sample_type
VA
ww_surv_jurisdiction
SARS-CoV-2
ww_surv_target_1
0
ww_surv_target_1_conc
copies/L
ww_surv_target_1_conc_unit
N gene (N2)
ww_surv_target_1_gene
no
ww_surv_target_1_known_present
ddPCR detection of SARS-CoV-2 using the BioRad PREvalence Kit on the BioRad QXOne
ww_surv_target_1_protocol
SARS-CoV-2
ww_surv_target_2
5464
ww_surv_target_2_conc
copies/L
ww_surv_target_2_conc_unit
E gene (orf4)
ww_surv_target_2_gene
yes
ww_surv_target_2_known_present