I
BRrepeats
1999-05-16T00:00:00
DOB
NA
EXrepeats
SAMN22250705
External Id
not applicable
FEV1FVC
not applicable
FEV1FVCZ
not applicable
FEV1_baseline
not applicable
FEVpcpred
not applicable
FVC
not applicable
FVCZ
not applicable
FVCpcpred
18679
FinalReads_ASVpipeline
University of Cape Town
INSDC center name
2022-11-28T00:00:00Z
INSDC first public
2022-11-28T09:43:11.446Z
INSDC last update
live
INSDC status
MIGS/MIMS/MIMARKS.human-associated
NCBI submission model
MIMARKS.survey
NCBI submission model
MIMARKS.survey.human-associated.6.0
NCBI submission package
33351
RawReads_ASVpipeline
ERS19161976
SRA accession
NA
WRrepeats
NA
WRrepeats_BP
NA
WRrepeats_WP
not applicable
abnhr
not applicable
abnrr
not applicable
abnsat
not applicable
acut_exac12m
not applicable
adherence
no
adm
13.98
ageyart
not applicable
all_3
not applicable
antibiotic12m
not applicable
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0301
barcode
806rcbc296
barcode_806R
not applicable
cd4
2018-02-09
collection_date
yes
cotrimoxazole
not applicable
cough_enrl
2013-05-09T00:00:00
dateart
2013-05-09T00:00:00
datehiv
Keywords: GSC:MIxS;MIMARKS:6.0
description
not applicable
dod
not applicable
dow
COTRIMOXAZOLE
drug_usage
4.76
duryart
not applicable
endfollowup
['not applicable', 'not applicable']
endtreatdate
NA
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
not applicable
f24mrcscore
not applicable
fev1z
Zimbabwe: Harare
geo_loc_name
comparison group
group
not applicable
hospitalised12m
Homo sapiens
host
18.7
host_age
not applicable
host_body_mass_index
No HIV-associated chronic lung disease
host_disease
not applicable
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
C136
host_subject_id
human respiratory
host_tissue_sampled
AACCACACATCG
index_sequence
sputum
isolation_source
not applicable
lastvisit
not applicable
lastvisitdate
17.82 S 31.04 E
lat_lon
NA
mock
NA
nadm
NA
nontemplate
not applicable
one_visit
not applicable
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P3
plate_number
NA
primestore_detail
HIV-associated chronic lung disease
pulmonary_disord
not applicable
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R3
run_processing_batch
stored in primestore
samp_mat_process
['not applicable', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
sequencing_control
sample_type
expectorated
sampling_induced_expectorated
BRrepeat
sequencing_control_details
yes
sequencing_controls
no
smoker
not applicable
sp05time
not applicable
study_complt_stat
no
tbtreat
0.021859678
templateDNA_16SqPCR
22.9969627
templateDNA_16SqPCR_Cq
30818.49088
templateDNA_16SqPCR_copies
MIMARKS Survey related sample from human sputum metagenome
title
not applicable
treatstopreason
not applicable
trial_arm
Week 0
visit
not applicable
visit012
not applicable
visit018
not applicable
visit1218
not applicable
visit_date
not applicable
visittotno
not applicable
vllog
not applicable
vload
not applicable
weight
H12
well
not applicable
zbmiuk
not applicable
zhauk
not applicable
zwauk
no
zymo_DNA