AB
BRrepeats
2000-11-20T00:00:00
DOB
NA
EXrepeats
SAMN22250710
External Id
not applicable
FEV1FVC
not applicable
FEV1FVCZ
not applicable
FEV1_baseline
not applicable
FEVpcpred
not applicable
FVC
not applicable
FVCZ
not applicable
FVCpcpred
17465
FinalReads_ASVpipeline
University of Cape Town
INSDC center name
2022-11-28T00:00:00Z
INSDC first public
2022-11-28T09:43:46.649Z
INSDC last update
live
INSDC status
MIGS/MIMS/MIMARKS.human-associated
NCBI submission model
MIMARKS.survey
NCBI submission model
MIMARKS.survey.human-associated.6.0
NCBI submission package
31437
RawReads_ASVpipeline
ERS19161981
SRA accession
NA
WRrepeats
NA
WRrepeats_BP
NA
WRrepeats_WP
not applicable
abnhr
not applicable
abnrr
not applicable
abnsat
not applicable
acut_exac12m
Adherent
adherence
missing
adm
missing
ageyart
not applicable
all_3
not applicable
antibiotic12m
not applicable
any3_reasons
missing
artdrug1stline
missing
artdrug2ndline
missing
artreg
missing
attendschool
BYD14LT3
barcode
806rcbc328
barcode_806R
not applicable
cd4
2019-03-11
collection_date
missing
cotrimoxazole
missing
cough_enrl
missing
dateart
missing
datehiv
Keywords: GSC:MIxS;MIMARKS:6.0
description
missing
dod
missing
dow
NA
drug_usage
missing
duryart
missing
endfollowup
['not applicable', 'missing']
endtreatdate
missing
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
not applicable
f24mrcscore
not applicable
fev1z
Malawi: Blantyre
geo_loc_name
trial
group
not applicable
hospitalised12m
Homo sapiens
host
18.3
host_age
not applicable
host_body_mass_index
HIV-associated chronic lung disease
host_disease
not applicable
host_height
yes
host_hiv_stat
missing
host_occupation
missing
host_sex
B3089
host_subject_id
human respiratory
host_tissue_sampled
GCAAAGCAAAGT
index_sequence
sputum
isolation_source
missing
lastvisit
missing
lastvisitdate
15.77 S 35.02 E
lat_lon
NA
mock
missing
nadm
NA
nontemplate
not applicable
one_visit
not applicable
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P4
plate_number
NA
primestore_detail
HIV-associated chronic lung disease
pulmonary_disord
not applicable
reason_hospi
no
rs14antib
NA
rs15antibty
R3
run_processing_batch
stored in primestore
samp_mat_process
['not applicable', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
sequencing_control
sample_type
expectorated
sampling_induced_expectorated
BRrepeat
sequencing_control_details
yes
sequencing_controls
no
smoker
not applicable
sp05time
missing
study_complt_stat
missing
tbtreat
0.047111817
templateDNA_16SqPCR
21.87205624
templateDNA_16SqPCR_Cq
66419.78353
templateDNA_16SqPCR_copies
MIMARKS Survey related sample from human sputum metagenome
title
missing
treatstopreason
Placebo
trial_arm
Week 48
visit
not applicable
visit012
not applicable
visit018
not applicable
visit1218
not applicable
visit_date
missing
visittotno
not applicable
vllog
not applicable
vload
not applicable
weight
H04
well
not applicable
zbmiuk
not applicable
zhauk
not applicable
zwauk
no
zymo_DNA