N
BRrepeats
1999-01-25T00:00:00
DOB
NA
EXrepeats
SAMN22248032
External Id
not applicable
FEV1FVC
not applicable
FEV1FVCZ
not applicable
FEV1_baseline
not applicable
FEVpcpred
not applicable
FVC
not applicable
FVCZ
not applicable
FVCpcpred
16240
FinalReads_ASVpipeline
University of Cape Town
INSDC center name
2022-11-28T00:00:00Z
INSDC first public
2022-11-28T09:43:16.746Z
INSDC last update
live
INSDC status
MIGS/MIMS/MIMARKS.human-associated
NCBI submission model
MIMARKS.survey
NCBI submission model
MIMARKS.survey.human-associated.6.0
NCBI submission package
34635
RawReads_ASVpipeline
ERS19161171
SRA accession
NA
WRrepeats
NA
WRrepeats_BP
NA
WRrepeats_WP
not applicable
abnhr
not applicable
abnrr
not applicable
abnsat
not applicable
acut_exac12m
Not Adherent
adherence
no
adm
10.55
ageyart
not applicable
all_3
not applicable
antibiotic12m
not applicable
any3_reasons
no
artdrug1stline
yes
artdrug2ndline
ATV/LPV/PI
artreg
no
attendschool
BSP0458
barcode
806rcbc280
barcode_806R
not applicable
cd4
2018-07-17
collection_date
yes
cotrimoxazole
no
cough_enrl
2009-08-15T00:00:00
dateart
2009-06-15T00:00:00
datehiv
Keywords: GSC:MIxS;MIMARKS:6.0
description
NA
dod
43312
dow
COTRIMOXAZOLE
drug_usage
8.92
duryart
2018-07-31T00:00:00
endfollowup
['not applicable', '2018-07-17T00:00:00']
endtreatdate
2018-07
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
not applicable
f24mrcscore
not applicable
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
not applicable
hospitalised12m
Homo sapiens
host
19.4
host_age
not applicable
host_body_mass_index
HIV-associated chronic lung disease
host_disease
not applicable
host_height
yes
host_hiv_stat
missing
host_occupation
female
host_sex
B1224
host_subject_id
human respiratory
host_tissue_sampled
ACTTATGCGGTT
index_sequence
sputum
isolation_source
NA
lastvisit
NA
lastvisitdate
17.82 S 31.04 E
lat_lon
NA
mock
NA
nadm
NA
nontemplate
not applicable
one_visit
not applicable
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P3
plate_number
NA
primestore_detail
HIV-associated chronic lung disease
pulmonary_disord
not applicable
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R2
run_processing_batch
stored in primestore
samp_mat_process
['not applicable', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
sequencing_control
sample_type
expectorated
sampling_induced_expectorated
BRrepeat
sequencing_control_details
yes
sequencing_controls
no
smoker
not applicable
sp05time
withdrawal
study_complt_stat
no
tbtreat
0.031135345
templateDNA_16SqPCR
22.14415493
templateDNA_16SqPCR_Cq
43895.6292
templateDNA_16SqPCR_copies
MIMARKS Survey related sample from human sputum metagenome
title
Refused
treatstopreason
Placebo
trial_arm
Week 0
visit
not applicable
visit012
not applicable
visit018
not applicable
visit1218
not applicable
visit_date
0
visittotno
not applicable
vllog
not applicable
vload
not applicable
weight
H10
well
not applicable
zbmiuk
not applicable
zhauk
not applicable
zwauk
no
zymo_DNA