2024-05-09
ENA first public
ERC000011
ENA-CHECKLIST
SAMEA115146125
External Id
The Roslin Institute (University of Edinburgh)
INSDC center name
2024-01-26T11:57:47Z
INSDC last update
public
INSDC status
ERS17876985
SRA accession
6755_HET_CTRL_s308.ctg000382l_hifiasm_large MAG
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
Hifiasm-meta
assembly software
Not applicable
binning parameters
Not applicable
binning software
Gallus gallus
broad-scale environmental context
2021-09-14
collection date
99.92
completeness score
CheckM2
completeness software
0.65
contamination score
This sample represents a metagenome assembled genome from the metagenomic sample ERS16138927
description
Caecal contents
environmental medium
United Kingdom
geographic location (country and/or sea)
55.86
geographic location (latitude)
-3.2
geographic location (longitude)
Caecal contents from a chicken (Gallus gallus)
isolation_source
Gastrointestinal tract microbiota
local environmental context
chicken gut metagenome
metagenomic source
uncultured Subdoligranulum sp.
organism
Metagenomic characterisation of the caecal microbiota of XCR1 knockout chickens
project name
ERS16138927
sample derived from
uncultured Subdoligranulum sp.
scientific_name
GTDB-Tk
taxonomic identity marker
6755_HET_CTRL_s308.ctg000382l_hifiasm_large MAG
title