2024-05-09
ENA first public
ERC000011
ENA-CHECKLIST
SAMEA114371242
External Id
The Roslin Institute (University of Edinburgh)
INSDC center name
2023-09-12T14:07:02Z
INSDC last update
public
INSDC status
ERS16360282
SRA accession
metabat2_pooled_hifiasm.1838
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
Hifiasm-meta
assembly software
hifiasm_meta -oasm
binning parameters
MetaBAT 2
binning software
Gallus gallus
broad-scale environmental context
2021-09-15
collection date
5.25
completeness score
CheckM2
completeness software
0.01
contamination score
This sample represents a metagenomic bin from the metagenomic sample ERS16138939, ERS16138940, ERS16138921, ERS16138927
description
Caecal contents
environmental medium
United Kingdom
geographic location (country and/or sea)
55.86
geographic location (latitude)
-3.2
geographic location (longitude)
metagenome
investigation type
Caecal contents from a chicken (Gallus gallus)
isolation_source
Gastrointestinal tract microbiota
local environmental context
chicken gut metagenome
metagenomic source
metagenome
organism
Metagenomic characterisation of the caecal microbiota of XCR1 knockout chickens
project name
ERS16138939, ERS16138940, ERS16138921, ERS16138927
sample derived from
metagenome
scientific_name
Sequel IIe
sequencing method
None
taxonomic identity marker
metabat2_pooled_hifiasm.1838
title