2024-05-09
ENA first public
ERC000011
ENA-CHECKLIST
SAMEA115146150
External Id
The Roslin Institute (University of Edinburgh)
INSDC center name
2024-01-26T11:57:48Z
INSDC last update
public
INSDC status
ERS17877010
SRA accession
metabat2_6737_HOM_CTRL_hifiasm.274 MAG
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
Hifiasm-meta
assembly software
Default MetaBAT 2 parameters
binning parameters
MetaBAT 2
binning software
Gallus gallus
broad-scale environmental context
2021-09-15
collection date
97.66
completeness score
CheckM2
completeness software
0.7
contamination score
This sample represents a metagenome assembled genome from the metagenomic sample ERS16138921
description
Caecal contents
environmental medium
United Kingdom
geographic location (country and/or sea)
55.86
geographic location (latitude)
-3.2
geographic location (longitude)
Caecal contents from a chicken (Gallus gallus)
isolation_source
Gastrointestinal tract microbiota
local environmental context
chicken gut metagenome
metagenomic source
Candidatus Mediterraneibacter gallistercoris
organism
Metagenomic characterisation of the caecal microbiota of XCR1 knockout chickens
project name
ERS16138921
sample derived from
Candidatus Mediterraneibacter gallistercoris
scientific_name
GTDB-Tk
taxonomic identity marker
metabat2_6737_HOM_CTRL_hifiasm.274 MAG
title