2024-05-09
ENA first public
ERC000011
ENA-CHECKLIST
SAMEA115146555
External Id
The Roslin Institute (University of Edinburgh)
INSDC center name
2024-01-26T11:57:51Z
INSDC last update
public
INSDC status
ERS17877416
SRA accession
metabat2_XCR1_HOM_7865_bwa.52 MAG
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
MEGAHIT
assembly software
Default MetaBAT 2 parameters
binning parameters
MetaBAT 2
binning software
Gallus gallus
broad-scale environmental context
2021-09-15
collection date
99.88
completeness score
CheckM2
completeness software
0.23
contamination score
This sample represents a metagenome assembled genome from the metagenomic sample ERS16138941
description
Caecal contents
environmental medium
United Kingdom
geographic location (country and/or sea)
55.86
geographic location (latitude)
-3.2
geographic location (longitude)
Caecal contents from a chicken (Gallus gallus)
isolation_source
Gastrointestinal tract microbiota
local environmental context
chicken gut metagenome
metagenomic source
Clostridium sp. CAG:678
organism
Metagenomic characterisation of the caecal microbiota of XCR1 knockout chickens
project name
ERS16138941
sample derived from
Clostridium sp. CAG:678
scientific_name
GTDB-Tk
taxonomic identity marker
metabat2_XCR1_HOM_7865_bwa.52 MAG
title