2024-05-09
ENA first public
ERC000011
ENA-CHECKLIST
SAMEA114372835
External Id
The Roslin Institute (University of Edinburgh)
INSDC center name
2023-09-12T14:08:31Z
INSDC last update
public
INSDC status
ERS16361876
SRA accession
pooled_unmapgallusfeed_hifi_tig00035178_hicanu_large
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
HiCanu
assembly software
canu maxInputCoverage=100000 correctedErrorRate=0.105 genomeSize=5m batMemory=200 useGrid= -pacbio-hifi
binning parameters
Not applicable
binning software
Gallus gallus
broad-scale environmental context
2021-09-15
collection date
27.4
completeness score
CheckM2
completeness software
0.04
contamination score
This sample represents a metagenomic bin from the metagenomic sample ERS16138939, ERS16138940, ERS16138921, ERS16138927
description
Caecal contents
environmental medium
United Kingdom
geographic location (country and/or sea)
55.86
geographic location (latitude)
-3.2
geographic location (longitude)
metagenome
investigation type
Caecal contents from a chicken (Gallus gallus)
isolation_source
Gastrointestinal tract microbiota
local environmental context
chicken gut metagenome
metagenomic source
metagenome
organism
Metagenomic characterisation of the caecal microbiota of XCR1 knockout chickens
project name
ERS16138939, ERS16138940, ERS16138921, ERS16138927
sample derived from
metagenome
scientific_name
Sequel IIe
sequencing method
None
taxonomic identity marker
pooled_unmapgallusfeed_hifi_tig00035178_hicanu_large
title