2024-05-14
ENA first public
ERC000024
ENA-CHECKLIST
SAMEA114579162
External Id
IOW Leibniz-Institut fur Ostseeforschung Warnemuende
INSDC center name
2023-11-06T10:23:55Z
INSDC last update
public
INSDC status
ERS16667734
SRA accession
130925:7c5a4a83-4c9c-42c9-97d6-2ddd1da6df67
Submitter Id
temperate marginal sea biome [ENVO:01000856]
broad-scale environmental context
GFBIO
broker name
2021-08-28
collection date
1.2
m
depth
Coastal metagenome taken in a Fucus visiculosus meadow (5cm from the plant, 20 cm above the sediment)
description
brackish water [ENVO:00002019]
environmental medium
water
environmental package
yes
environmental_sample
Lib_1
experiment
Sweden
geographic location (country and/or sea)
56.656863
DD
geographic location (latitude)
16.3584
DD
geographic location (longitude)
Kalmar Strait
geographic location (region and locality)
mimarks-survey
investigation type
microbial community [PCO:1000004]
local environmental context
PowerSoil DNA isolation - DNeasy PowerSoil Pro Kit
nucleic acid extraction
marine metagenome
organism
FWD:CCTACGGGNGGCWGCAG REV:GACTACHVGGGTATCTAATCC
pcr primers
16S and 18S rRNA amplicon sequencing of coastal microbial communities across the salinity gradient of the Baltic Sea in pelagic, benthic, and biofilm environments
project name
L01
run
filtered over 0.22 micrometer filters and shockfrozen
sample material processing
Coastal metagenome taken in a Fucus visiculosus meadow (5cm from the plant, 20 cm above the sediment)
sample_description
marine metagenome
scientific_name
Illumina MiSeq
sequencing method
true
submitted to insdc
V3-V4
target subfragment
BV-20-A-c
title
1.2
m
total depth of water column
water
water environmental package