2024-05-17
ENA first public
ERC000011
ENA-CHECKLIST
UNIVERSITY OF SZEGED
INSDC center name
public
INSDC status
ERS19893070
SRA accession
toti_illumina_novaseq_WGS_20240129_zymo_magbead_R1
Submitter Id
AGATCGGAAGAG
adapters
Csongrad county
broad-scale environmental context
minitax
chimera check software
2024-01-06
collection date
dog
common name
Dog stool sample of Toti
description
no
environmental medium
Hungary
geographic location (country and/or sea)
46.253
geographic location (latitude)
20.14824
geographic location (longitude)
14 years
host age
stool
host body product
Hungarian herding terrier: Pumi
host common name
omnivore
host diet
Harsanyi-Tekergo Bator
host family relationship
Canis lupus familiaris
host scientific name
male
host sex
not applicable
host subject id
cross-breeding of Hungarian Puli with French and German herding dogs originated from 17. century
host subspecific genetic lineage
9615
host taxid
IDT xGen DNA Lib Prep Kit
library construction method
not provided
library reads sequenced
pcr based
library screening strategy
not provided
library size
Szeged
local environmental context
missing: third party data
multiplex identifiers
not provided
nucleic acid amplification
ZymoBIOMICS 96 MagBead DNA Kit, Zymo
nucleic acid extraction
Canis lupus familiaris
organism
not collected
organism count
missing: third party data
pcr conditions
not applicable
pcr primers
Ultra-deep, hybrid metagenomic sequencing of canine gut microbiome
project name
n.a
sample storage duration
-80
sample storage temperature
Canis lupus familiaris
scientific_name
FastQC
sequence quality check
Illumina, IDT xGen DNA Lib Prep Kit
sequencing method
whole genome
target gene
not applicable
target subfragment
20
temperature
toti_illumina_novaseq_WGS_20240129_zymo_magbead_R1
title