2024-05-23
ENA first public
ERC000047
ENA-CHECKLIST
SAMEA14434235
External Id
BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC center name
2022-05-23T15:49:21Z
INSDC last update
public
INSDC status
ERS12042886
SRA accession
HRS-ES1-bin-219
Submitter Id
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly quality
MEGAHIT; kmer set 49,69,89,109,129,149
assembly software
coverage and kmer
binning parameters
MetaBAT2
binning software
2018-04-03
collection date
51.72
%
completeness score
checkm
completeness software
1.72
%
contamination score
Bacteria; Bacteroidetes
description
freshwater lake
environment (biome)
lake
environment (feature)
fresh water
environment (material)
Czech Republic
geographic location (country and/or sea)
48.846361
DD
geographic location (latitude)
14.487639
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
Freshwater lake
isolation_source
freshwater metagenome
metagenomic source
Chitinophaga pinensis
organism
PRJEB52406
project name
ERS11712853
sample derived from
Chitinophaga pinensis
scientific_name
Illumina NovaSeq 6000
sequencing method
multi-marker approach
taxonomic identity marker
ERS11712853
title