2024-05-24
ENA first public
ERC000047
ENA-CHECKLIST
SAMEA110053577
External Id
Biology Centre CAS
INSDC center name
2022-08-23T18:21:01Z
INSDC last update
public
INSDC status
ERS12066456
SRA accession
JJ-ST915-40-4-mx-bin805
Submitter Id
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly quality
MEGAHIT
assembly software
coverage and kmer
binning parameters
MetaBAT2
binning software
2005-08-01
collection date
100
%
completeness score
checkm
completeness software
0.57
%
contamination score
JJ-ST915-40-4-mx-bin805 - Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Methylophilaceae; Methylophilus
description
freshwater lake
environment (biome)
lake
environment (feature)
fresh water
environment (material)
Czech Republic
geographic location (country and/or sea)
50.17527312
DD
geographic location (latitude)
12.87909072
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
Freshwater lake
isolation_source
freshwater metagenome
metagenomic source
Methylophilus rhizosphaerae
organism
PRJEB49198
project name
ERS11624224
sample derived from
Methylophilus rhizosphaerae
scientific_name
Illumina NovaSeq 6000
sequencing method
multi-marker approach
taxonomic identity marker
ERS11624224
title