2024-05-24
ENA first public
ERC000047
ENA-CHECKLIST
SAMEA110053245
External Id
Biology Centre CAS
INSDC center name
2022-08-23T18:21:01Z
INSDC last update
public
INSDC status
ERS12066601
SRA accession
VK-R92-R2-2-m1-bin483
Submitter Id
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly quality
MEGAHIT
assembly software
coverage and kmer
binning parameters
MetaBAT2
binning software
2018-06-04
collection date
99.08
%
completeness score
checkm
completeness software
0.74
%
contamination score
VK-R92-R2-2-m1-bin483 - Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae
description
freshwater lake
environment (biome)
lake
environment (feature)
fresh water
environment (material)
Czech Republic
geographic location (country and/or sea)
48.84930562
DD
geographic location (latitude)
14.48877707
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
Freshwater lake
isolation_source
freshwater metagenome
metagenomic source
Bordetella parapertussis
organism
PRJEB49198
project name
ERS11624251
sample derived from
Bordetella parapertussis
scientific_name
Illumina NovaSeq 6000
sequencing method
multi-marker approach
taxonomic identity marker
ERS11624251
title