2024-03-12
ENA first public
ERC000047
ENA-CHECKLIST
EMG
INSDC center name
public
INSDC status
ERS18422314
SRA accession
SRR5788420_binner123_Refined_10
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaspades_v3.15.3
assembly software
default
binning parameters
MGnify-genomes-generation-pipeline_v1.0.0
binning software
water
broad-scale environmental context
EBI-EMG
broker name
2011-06-14
collection date
90.45
%
completeness score
CheckM2_v1.0.1
completeness software
0.94
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR5788420 of study SRP110813.
description
ocean
environmental medium
Pacific Ocean
geographic location (country and/or sea)
-32.51500000
DD
geographic location (latitude)
-164.98117000
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
marine metagenome
isolation_source
marine
local environmental context
marine metagenome
metagenomic source
Candidatus Thermoplasmatota archaeon
organism
Marine metagenomes from the bioGEOTRACES project Metagenome
project name
SAMN07136799
sample derived from
Candidatus Thermoplasmatota archaeon
scientific_name
NextSeq 550
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRR5788420_binner123_Refined_10
title