2024-03-17
ENA first public
ERC000047
ENA-CHECKLIST
EMG
INSDC center name
public
INSDC status
ERS18495858
SRA accession
ERR599028_binner12_Refined_48
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
megahit_v1.1.3
assembly software
default
binning parameters
MGnify-genomes-generation-pipeline_v1.0.0
binning software
water
broad-scale environmental context
EBI-EMG
broker name
not provided
collection date
92.73
%
completeness score
CheckM2_v1.0.1
completeness software
0.34
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR599028 of study ERP001736.
description
tara
environmental medium
not provided
geographic location (country and/or sea)
20.82220000
DD
geographic location (latitude)
63.51330000
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
marine metagenome
isolation_source
ocean
local environmental context
marine metagenome
metagenomic source
uncultured Oceanospirillaceae bacterium
organism
Seawater was filtered from different depths to retain small cell sizes (Bacteria Organisms). The DNA was extracted and submitted to high throughput sequencing.
project name
SAMEA2619952
sample derived from
uncultured Oceanospirillaceae bacterium
scientific_name
Illumina HiSeq 2000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: ERR599028_binner12_Refined_48
title