2024-03-12
ENA first public
ERC000047
ENA-CHECKLIST
EMG
INSDC center name
public
INSDC status
ERS18422353
SRA accession
SRR5788349_binner13_Refined_1
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaspades_v3.15.3
assembly software
default
binning parameters
MGnify-genomes-generation-pipeline_v1.0.0
binning software
water
broad-scale environmental context
EBI-EMG
broker name
2011-03-06
collection date
97.78
%
completeness score
CheckM2_v1.0.1
completeness software
0.71
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR5788349 of study SRP110813.
description
ocean
environmental medium
Atlantic Ocean
geographic location (country and/or sea)
-48.93580000
DD
geographic location (latitude)
-48.79330000
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
marine metagenome
isolation_source
marine
local environmental context
marine metagenome
metagenomic source
uncultured Saprospirales bacterium
organism
Marine metagenomes from the bioGEOTRACES project Metagenome
project name
SAMN07136680
sample derived from
uncultured Saprospirales bacterium
scientific_name
NextSeq 550
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRR5788349_binner13_Refined_1
title