PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2024-06-07
ENA first public
ERC000047
ENA-CHECKLIST
University of California
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS20221448
SRA accession
39afed41-7713-49c8-b7fe-57fe8515de19
Submitter Id
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly quality
metaMDBG (version 0.3)
assembly software
UNIVERSITY OF CALIFORNIA
barcoding center
coverage; graph; hic-mapping
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); bin3C (version 0.3.3); MaxBin (version 2.2.7); MetaTOR
binning software
aquatic biome
broad-scale environmental context
Michael Dawson
collected_by
UC Merced
collecting institution
2022-07-28
collection date
97.2
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
0.0
%
contamination score
15.0
m
depth
adult jellyfish tissue
environmental medium
Palau
geographic location (country and/or sea)
7.18
DD
geographic location (latitude)
134.28
DD
geographic location (longitude)
Koror | Risong Cove
geographic location (region and locality)
Lagoon
habitat
adult
host life stage
Aurelia sp. 3 sensu Dawson et al 2005
host scientific name
female
host sex
237398
host taxid
Michael Dawson
identified_by
UC Merced
identifier_affiliation
metagenome-assembled genome
investigation type
Jellyfish: Aurelia sp. 3 sensu Dawson et al 2005
isolation_source
marine biome
local environmental context
jellyfish metagenome
metagenomic source
37
number of standard tRNAs extracted
Spirochaetia bacterium
organism
WHOLE ORGANISM
organism part
2022-07-28
original collection date
Palau | Koror | Risong Cove
original collection location
7.1825
DD
original geographic location (latitude)
134.2838
DD
original geographic location (longitude)
ASG
project name
by hand
sample collection method
SAMEA115712517
sample derived from
Spirochaetia bacterium
scientific_name
Pacbio Sequel II
sequencing method
UCALI0000002
specimen_id
NOT_APPLICABLE
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic classification defined by topology and ANI
taxonomic identity marker
39afed41-7713-49c8-b7fe-57fe8515de19-asg-MAGScoT_cleanbin_000002
title
jsAurSpeb1.Spirochaetia_1
tolid