PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2024-06-10
ENA first public
ERC000050
ENA-CHECKLIST
Queen Mary University of London
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS20226006
SRA accession
60ca992e-a94e-4e44-bc0e-4a64e85d55bf
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
Hifiasm (version 0.19.8)
assembly software
NOT PROVIDED
barcoding center
coverage; graph; hic-mapping
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); bin3C (version 0.3.3); MaxBin (version 2.2.7); MetaTOR
binning software
aquatic biome
broad-scale environmental context
RALPH APPY
collected_by
PORT OF LOS ANGELES
collecting institution
2021-09-23
collection date
86.44
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
1.23
%
contamination score
0-2
m
depth
adult annelid tissue
environmental medium
USA
geographic location (country and/or sea)
34.11
DD
geographic location (latitude)
-119.13
DD
geographic location (longitude)
California | Ventura County | Mugu Lagoon
geographic location (region and locality)
salt marsh
habitat
adult
host life stage
Branchellion lobata
host scientific name
not collected
host sex
375517
host taxid
SHANA GOFFREDI
identified_by
OCCIDENTAL COLLEGE
identifier_affiliation
metagenome-assembled genome
investigation type
Annelid: Branchellion lobata
isolation_source
marine biome
local environmental context
annelid metagenome
metagenomic source
36
number of standard tRNAs extracted
uncultured Gammaproteobacteria bacterium
organism
WHOLE ORGANISM
organism part
ASG
project name
SAMEA115717033
sample derived from
uncultured Gammaproteobacteria bacterium
scientific_name
Pacbio Sequel II
sequencing method
QMOUL0000035
specimen_id
SIO:BIC:A13684
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic classification defined by topology and ANI
taxonomic identity marker
60ca992e-a94e-4e44-bc0e-4a64e85d55bf-asg-MAGScoT_cleanbin_000003
title
wcBraLoba9.Gammaproteobacteria_2
tolid