PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2024-06-10
ENA first public
ERC000047
ENA-CHECKLIST
Queen Mary University of London
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS20226013
SRA accession
27f41666-8290-4d0e-87ab-1dca81c034a3
Submitter Id
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly quality
Hifiasm (version 0.19.8)
assembly software
NOT PROVIDED
barcoding center
coverage; graph; hic-mapping
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); bin3C (version 0.3.3); MaxBin (version 2.2.7); MetaTOR
binning software
aquatic biome
broad-scale environmental context
RALPH APPY
collected_by
PORT OF LOS ANGELES
collecting institution
2021-09-23
collection date
92.54
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
0.19
%
contamination score
0-2
m
depth
adult annelid tissue
environmental medium
USA
geographic location (country and/or sea)
34.11
DD
geographic location (latitude)
-119.13
DD
geographic location (longitude)
California | Ventura County | Mugu Lagoon
geographic location (region and locality)
salt marsh
habitat
adult
host life stage
Branchellion lobata
host scientific name
not collected
host sex
375517
host taxid
SHANA GOFFREDI
identified_by
OCCIDENTAL COLLEGE
identifier_affiliation
metagenome-assembled genome
investigation type
Annelid: Branchellion lobata
isolation_source
marine biome
local environmental context
annelid metagenome
metagenomic source
39
number of standard tRNAs extracted
uncultured Mesonia sp.
organism
WHOLE ORGANISM
organism part
ASG
project name
SAMEA115717033
sample derived from
uncultured Mesonia sp.
scientific_name
Pacbio Sequel II
sequencing method
QMOUL0000035
specimen_id
SIO:BIC:A13684
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic classification defined by topology and ANI
taxonomic identity marker
27f41666-8290-4d0e-87ab-1dca81c034a3-asg-MAGScoT_cleanbin_000007
title
wcBraLoba9.Mesonia_sp_1
tolid