2024-06-22
ENA first public
ERC000024
ENA-CHECKLIST
SAMEA110176263
External Id
Microbial ecology
INSDC center name
2022-06-22T15:55:49Z
INSDC last update
public
INSDC status
ERS12275075
SRA accession
1STMAJUP8BS
Submitter Id
2010-12-13
collection date
Sample of benthic sediment, taken from a run located upstream a combined-sewer overflow outlet spilling out in the channel of an intermittent stream
description
watercourse (ENVO:00000029)
environment (biome)
stream bed (ENVO_00000383)
environment (feature)
sediment
environment (material)
France
geographic location (country and/or sea)
0-0.05
m
geographic location (depth)
314
m
geographic location (elevation)
45.743931
DD
geographic location (latitude)
4.689935
DD
geographic location (longitude)
Auvergne-Rh�ne-Alpes administrative region, Rh�ne department, Gr�zieu-la-Varenne town
geographic location (region and locality)
mimarks-survey
investigation type
freshwater sediment metagenome
organism
ILMN-PTCF2 (GTGCCGYTRTGYGGCAAGA) and ILMN-PTCF2m (GTGCCCYTRTGYGGCAAGT); ILMN-PTCR2 (ATCAKYGCGGCGCGGTCRTA) and ILMNPTCR2m (ATGAGBGCTGCCCTGTCRTA)
pcr primers
Ecological assessment of combined-sewer overflow practices (PRJEB53724) - Domic 2149
project name
before the combined-sewer overflow device was made compliant (more than 20 spill days per year)
sampling campaign
UP8
sampling transect ID
freshwater sediment metagenome
scientific_name
Sequencing by synthesis (Illumina MiSeq Illumina V3)
sequencing method
Thiopurine S-methyltransferase (tpm)
target gene
200-235 bp, including the VPLCGK and YDRAAM conserved domains
target subfragment
benthic sediment
title
water
water environmental package