2024-06-22
ENA first public
ERC000024
ENA-CHECKLIST
SAMEA110176325
External Id
Microbial ecology
INSDC center name
2022-06-22T15:55:50Z
INSDC last update
public
INSDC status
ERS12275137
SRA accession
2NDPOSCTRLWW2
Submitter Id
2018-11-13
collection date
Sample of wastewater, taken in the nearest manhole to a combined-sewer overflow outlet spilling out in the channel of an intermittent stream
description
wastewater (ENVO:00002001)
environment (biome)
sewage (ENVO:00002018)
environment (feature)
water
environment (material)
France
geographic location (country and/or sea)
0
m
geographic location (depth)
314
m
geographic location (elevation)
45.743931
DD
geographic location (latitude)
4.689935
DD
geographic location (longitude)
Auvergne-Rh�ne-Alpes administrative region, Rh�ne department, Marcy-l'Etoile town
geographic location (region and locality)
mimarks-survey
investigation type
wastewater metagenome
organism
ILMN-PTCF2 (GTGCCGYTRTGYGGCAAGA) and ILMN-PTCF2m (GTGCCCYTRTGYGGCAAGT); ILMN-PTCR2 (ATCAKYGCGGCGCGGTCRTA) and ILMNPTCR2m (ATGAGBGCTGCCCTGTCRTA)
pcr primers
Ecological assessment of combined-sewer overflow practices (PRJEB53724) - Domic 2212
project name
not provided
sampling campaign
not provided
sampling transect ID
wastewater metagenome
scientific_name
Sequencing by synthesis (Illumina MiSeq Illumina V3)
sequencing method
Thiopurine S-methyltransferase (tpm)
target gene
200-235 bp, including the VPLCGK and YDRAAM conserved domains
target subfragment
wastewater
title
water
water environmental package