2024-06-25
ENA first public
ERC000047
ENA-CHECKLIST
EMG
INSDC center name
public
INSDC status
ERS20286164
SRA accession
SRR1572169_binner23_Refined_36
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
megahit_v1.2.9
assembly software
default
binning parameters
MGnify-genomes-generation-pipeline_v1.0.0
binning software
antarctica
broad-scale environmental context
EBI-EMG
broker name
2010-11-28
collection date
81.26
%
completeness score
CheckM2_v1.0.1
completeness software
2.42
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR1572169 of study SRP046757.
description
sediment
environmental medium
Antarctica
geographic location (country and/or sea)
-77.35166930
DD
geographic location (latitude)
167.16672400
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
sediment metagenome
isolation_source
ice cave
local environmental context
sediment metagenome
metagenomic source
uncultured Hyphomicrobium sp.
organism
A metagenome from fumarole sediments sampled from Warren Cave, Antarctica. Warren Cave is an ice cave on Mt. Erebus Volcano. These sediments were sampled from deep within the dark cave where there is no known source of introduced organic carbon. Dark ice caves such as Warren Cave exemplify an environment where the input of plant and other photosynthetic-derived organic carbon is minimal and thus provides an environment at the extreme low end of the spectrum for carbon concentration. Under these conditions microbes will be forced to scavenge any and all energy sources available, including gases and inorganic compounds found in the rock.
project name
SAMN02929681
sample derived from
uncultured Hyphomicrobium sp.
scientific_name
Illumina HiSeq 2000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRR1572169_binner23_Refined_36
title