2024-06-26
ENA first public
ERC000011
ENA-CHECKLIST
Ifremer
INSDC center name
public
INSDC status
Sequencing by synthesis (Illumina)
LIBRARY_CONSTRUCTION_PROTOCOL
ERS20392816
SRA accession
sam_B2S0R2T6L
Submitter Id
16S rRNA
TARGETED_LOCI
5'-CTTTCCCTACACGACGCTCTTCCGATCT-3'; 5'-GGAGTTCAGACGTGTGCTCTTCCGATCT-3'
adapters
SeBiMER
broker name
IFREMER, Rue de l'Ile d'Yeu 44000 Nantes FRANCE
collecting institution
not provided
collection date
Oceane Reignier
collector name
cyanobacteria bloom metagenome
common name
cyanobacterial bloom
environment (biome)
freshwater lake
environment (feature)
water
environment (material)
No
environmental_sample
France
geographic location (country and/or sea)
not collected
geographic location (depth)
not collected
geographic location (elevation)
not collected
geographic location (latitude)
not collected
geographic location (longitude)
not collected
geographic location (region and locality)
metagenome
investigation type
cyanobacterial culture
isolation_source
CCAGCC
multiplex identifiers
algal bloom metagenome
organism
515F : 5'-GTGYCAGCMGCCGCGGTAA-3 ; 926R : 5'-CCGYCAATTYMTTTRAGTTT-3
pcr primers
demisel
project name
Nutrient: limiting - Salinity: 0 - Fraction: free - Sampling day: day_6 - Replicate: replicate_2
sample_description
B2S0R2T6L
sample_name
algal bloom metagenome
scientific_name
Sequencing by synthesis (Illumina)
sequencing method
16S rRNA
target gene
V4-V5 hypervariable region of the 16S rRNA gene
target subfragment
bacterial community associated with cyanobacteria under different salinity and nutrient conditions
title