2024-06-26
ENA first public
ERC000011
ENA-CHECKLIST
Ifremer
INSDC center name
public
INSDC status
Sequencing by synthesis (Illumina)
LIBRARY_CONSTRUCTION_PROTOCOL
ERS20392806
SRA accession
sam_B2InoR1T0L
Submitter Id
16S rRNA
TARGETED_LOCI
5'-CTTTCCCTACACGACGCTCTTCCGATCT-3'; 5'-GGAGTTCAGACGTGTGCTCTTCCGATCT-3'
adapters
SeBiMER
broker name
IFREMER, Rue de l'Ile d'Yeu 44000 Nantes FRANCE
collecting institution
2021-09-21
collection date
Oceane Reignier
collector name
cyanobacteria bloom metagenome
common name
cyanobacterial bloom
environment (biome)
freshwater lake
environment (feature)
water
environment (material)
No
environmental_sample
France
geographic location (country and/or sea)
0.5
m
geographic location (depth)
47.562508
DD
geographic location (latitude)
-2.492130
DD
geographic location (longitude)
FRANCE, Morbihan, Billiers
geographic location (region and locality)
metagenome
investigation type
surface water
isolation_source
GGTTAT
multiplex identifiers
algal bloom metagenome
organism
515F : 5'-GTGYCAGCMGCCGCGGTAA-3 ; 926R : 5'-CCGYCAATTYMTTTRAGTTT-3
pcr primers
demisel
project name
Nutrient: limiting - Salinity: 0 - Fraction: free - Sampling day: day_0 - Replicate: replicate_1
sample_description
B2InoR1T0L
sample_name
algal bloom metagenome
scientific_name
Sequencing by synthesis (Illumina)
sequencing method
16S rRNA
target gene
V4-V5 hypervariable region of the 16S rRNA gene
target subfragment
bacterial community associated with cyanobacteria under different salinity and nutrient conditions
title