PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2024-07-04
ENA first public
ERC000050
ENA-CHECKLIST
Geomar Helmholtz Centre
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS20526488
SRA accession
cbc4b2a4-a3fe-428f-a194-366706d081f4
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG (version 0.3)
assembly software
coverage; graph
binning parameters
DASTOOL (version 1.1.5); MetaBat (version 2.15); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
THIERRY PEREZ
collected_by
CNRS
collecting institution
2021-03-23
collection date
85.97
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
0.0
%
contamination score
20
m
depth
adult sponge tissue
environmental medium
France
geographic location (country and/or sea)
43.16
DD
geographic location (latitude)
5.60
DD
geographic location (longitude)
La Ciotat
geographic location (region and locality)
dark cave
habitat
adult
host life stage
Lycopodina hypogea
host scientific name
not applicable
host sex
2491183
host taxid
THIERRY PEREZ
identified_by
CNRS
identifier_affiliation
metagenome-assembled genome
investigation type
Sponge: Lycopodina hypogea
isolation_source
marine benthic biome
local environmental context
sponge metagenome
metagenomic source
34
number of standard tRNAs extracted
bacterium
organism
WHOLE ORGANISM
organism part
ASG
project name
Heterotrophic Microbiome (Mostly)
relationship
SAMEA115803500
sample derived from
bacterium
scientific_name
Pacbio Sequel II
sequencing method
GHC0000171
specimen_id
NOT PROVIDED
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic novelty determined using RED
taxonomic identity marker
cbc4b2a4-a3fe-428f-a194-366706d081f4-asg-bin.6
title
odLycHypo2.Bacteria_2
tolid