2024-07-04
ENA first public
ERC000047
ENA-CHECKLIST
KOPRI
INSDC center name
public
INSDC status
ERS20443780
SRA accession
07C-BC-St04_bin.5.orig
Submitter Id
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly quality
MEGAHIT (v1.2.9)
assembly software
completeness > 70%, contamination > 10%
binning parameters
MaxBin2 (v2.2.6), MetaBAT2 (v2.12.1), CONCOCT (v1.0.0)
binning software
polar environment [ENVO:01001703]
broad-scale environmental context
2016-09-03
collection date
92.29
%
completeness score
CheckM (v1.2.2)
completeness software
2.17
%
contamination score
Metagenome-assembled genome from uncultured Gammaproteobacteria bacterium
description
marine sediment [ENVO:03000033]
environmental medium
Arctic Ocean
geographic location (country and/or sea)
75.4231
DD
geographic location (latitude)
171.4932
DD
geographic location (longitude)
marine sediment
isolation_source
seafloor [ENVO:00000482]
local environmental context
marine sediment metagenome
metagenomic source
uncultured Gammaproteobacteria bacterium
organism
Marine sediment microbiomes in East Siberian Sea
project name
ERS20273658
sample derived from
uncultured Gammaproteobacteria bacterium
scientific_name
multi marker approach
taxonomic identity marker
07C-BC-St04_bin.5.orig
title