PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2024-07-05
ENA first public
ERC000050
ENA-CHECKLIST
Geomar Helmholtz Centre
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS20531201
SRA accession
9dfbaa69-a243-452f-b839-31650f91d49d
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG (version 0.3)
assembly software
coverage; graph; hic-mapping
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); bin3C (version 0.3.3); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
NICOLE WEBSTER
collected_by
AIMS
collecting institution
2020-09-23
collection date
71.55
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
5.17
%
contamination score
8.0
m
depth
adult sponge tissue
environmental medium
Australia
geographic location (country and/or sea)
18.91
DD
geographic location (latitude)
147.70
DD
geographic location (longitude)
Queensland | Great Barrier Reef | Davies Reef
geographic location (region and locality)
Reef
habitat
adult
host life stage
Rhopaloeides odorabile
host scientific name
not collected
host sex
476028
host taxid
NICOLE WEBSTER
identified_by
AIMS
identifier_affiliation
metagenome-assembled genome
investigation type
Sponge: Rhopaloeides odorabile
isolation_source
marine coral reef biome
local environmental context
sponge metagenome
metagenomic source
52
number of standard tRNAs extracted
Bryobacterales bacterium
organism
WHOLE ORGANISM
organism part
ASG
project name
SAMEA115807548
sample derived from
Bryobacterales bacterium
scientific_name
Pacbio Sequel II
sequencing method
GHC0000117
specimen_id
NOT PROVIDED
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic novelty determined using RED
taxonomic identity marker
9dfbaa69-a243-452f-b839-31650f91d49d-asg-MAGScoT_cleanbin_000171
title
odRhoOdor1.Bryobacterales_4
tolid