PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2024-07-05
ENA first public
ERC000047
ENA-CHECKLIST
Geomar Helmholtz Centre
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS20531279
SRA accession
1551c8a5-dc05-4db4-a2c2-06e96cfb4e9a
Submitter Id
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly quality
metaMDBG (version 0.3)
assembly software
coverage; graph; hic-mapping
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); bin3C (version 0.3.3); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
NICOLE WEBSTER
collected_by
AIMS
collecting institution
2020-09-23
collection date
94.96
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
0.0
%
contamination score
8.0
m
depth
adult sponge tissue
environmental medium
Australia
geographic location (country and/or sea)
18.91
DD
geographic location (latitude)
147.70
DD
geographic location (longitude)
Queensland | Great Barrier Reef | Davies Reef
geographic location (region and locality)
Reef
habitat
adult
host life stage
Rhopaloeides odorabile
host scientific name
not collected
host sex
476028
host taxid
NICOLE WEBSTER
identified_by
AIMS
identifier_affiliation
metagenome-assembled genome
investigation type
Sponge: Rhopaloeides odorabile
isolation_source
marine coral reef biome
local environmental context
sponge metagenome
metagenomic source
56
number of standard tRNAs extracted
Dehalococcoidia bacterium
organism
WHOLE ORGANISM
organism part
ASG
project name
SAMEA115807548
sample derived from
Dehalococcoidia bacterium
scientific_name
Pacbio Sequel II
sequencing method
GHC0000117
specimen_id
NOT PROVIDED
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic classification defined by topology and ANI
taxonomic identity marker
1551c8a5-dc05-4db4-a2c2-06e96cfb4e9a-asg-MAGScoT_cleanbin_000090
title
odRhoOdor1.Dehalococcoidia_9
tolid