377
# contigs
2024-07-06
ENA first public
ERC000050
ENA-CHECKLIST
2122979
Genome size (bp)
University of Copenhagen
INSDC center name
public
INSDC status
33297
Longest contig (bp)
8081
N50 (contigs)
ERS20524928
SRA accession
sam_R6-E.metabat.61
Submitter Id
MEGAHIT v1.2.9
assembly software
minContig 1500, minCV 1.0, minCVSum 1.0, maxP 95%, minS 60, and maxEdges 200
binning parameters
MetaBAT2 v2.14 (biotools:MetaBAT_2)
binning software
aquatic biome [ENVO:00002030]|marine biome [ENVO:00000447]|coastal sea water [ENVO:00002150]
broad-scale environmental context
2020-05-14
collection date
89.9
%
completeness score
checkM v1.1.2
completeness software
8.06
%
contamination score
This sample represents a metagenomic bin from the metagenomic sample ERS19359158
description
coastal sea water [ENVO:00002150]|ocean water [ENVO:00002151]|sea water [ENVO:00002149]
environmental medium
Denmark
geographic location (country and/or sea)
55.713
DD
geographic location (latitude)
12.066667
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
water [ENVO:00002006]
isolation_source
temperate marginal sea biome [ENVO:01000856]|neritic epipelagic zone biome [ENVO:01000042 ]|coastal water body [ENVO:02000049]
local environmental context
aquatic metagenome
metagenomic source
uncultured prokaryote
organism
B1-Ocean
project name
ERS19359158
sample derived from
uncultured prokaryote
scientific_name
Taxonomy identified using GTB-Tk v2.1.0
taxonomic identity marker
Binned sample R6-E.metabat.61
title