2024-07-08
ENA first public
ERC000047
ENA-CHECKLIST
SAMEA114858555
External Id
National Institute of Public Health and Environment (RIVM)
INSDC center name
2023-12-08T14:09:12Z
INSDC last update
public
INSDC status
ERS17283871
SRA accession
Ir_f3_Mm
Submitter Id
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly quality
Flye 2.9-b1768 , Polypolish v0.5.0
assembly software
N/A
binning parameters
Tick holobiome metagenomic reads were filtered using reference genome GCA_000219355.1, mapped reads were then assembled
binning software
forest biome
broad-scale environmental context
2022-03-23
collection date
100
%
completeness score
checkm
completeness software
0
%
contamination score
Candidatus Midichloria MAG from a Ixodes ricinus tick metagenome
description
Arthropoda
environmental medium
Netherlands
geographic location (country and/or sea)
51.9769444
DD
geographic location (latitude)
5.69922
DD
geographic location (longitude)
Ixodes ricinus
isolation_source
planted forest
local environmental context
tick metagenome
metagenomic source
Candidatus Midichloria mitochondrii
organism
Comparative genomics of pathogenic Rickettsial symbionts in ticks
project name
ERS17138679
sample derived from
Candidatus Midichloria mitochondrii
scientific_name
Whole genome
taxonomic identity marker
Candidatus Midichloria mitochondrii Ir_f3 MAG
title