2024-07-08
ENA first public
ERC000047
ENA-CHECKLIST
SAMEA114862737
External Id
National Institute of Public Health and Environment (RIVM)
INSDC center name
2023-12-11T14:05:26Z
INSDC last update
public
INSDC status
ERS17300445
SRA accession
Ir_f1_MT
Submitter Id
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly quality
SPAdes v3.15.4, Polypolish v0.5.0
assembly software
N/A
binning parameters
Tick holobiome metagenomic reads were filtered using Ixodes reference mitochondrial genomes, mapped reads were then assembled
binning software
forest biome
broad-scale environmental context
2022-03-23
collection date
castor bean tick
common name
100
%
completeness score
manual
completeness software
0
%
contamination score
Iricinus ixodes mitochondrion MAG assembled from the holobiome
description
Arthropoda
environmental medium
Netherlands
geographic location (country and/or sea)
51.9769444
DD
geographic location (latitude)
5.69922
DD
geographic location (longitude)
Ixodes ricinus
isolation_source
planted forest
local environmental context
tick metagenome
metagenomic source
Ixodes ricinus
organism
Comparative genomics of pathogenic Rickettsial symbionts in ticks
project name
ERS17138680
sample derived from
Ixodes ricinus
scientific_name
Whole genome
taxonomic identity marker
Iricinus ixodes mitochondrion genome Ir_f1 MAG
title