2024-07-08
ENA first public
ERC000047
ENA-CHECKLIST
SAMEA114806802
External Id
National Institute of Public Health and Environment (RIVM)
INSDC center name
2023-12-08T14:04:58Z
INSDC last update
public
INSDC status
ERS17229131
SRA accession
Ir_f16_Rh
Submitter Id
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly quality
Flye 2.9-b1768 , Polypolish v0.5.0
assembly software
N/A
binning parameters
Tick holobiome metagenomic reads were filtered using available Ricketssia genomes, mapped reads were then assembled
binning software
forest biome
broad-scale environmental context
2022-03-23
collection date
99.53
%
completeness score
checkm
completeness software
0
%
contamination score
Rickettsia helvetica MAG from a Ixodes ricinus tick metagenome
description
Arthropoda
environmental medium
Netherlands
geographic location (country and/or sea)
51.9769444
DD
geographic location (latitude)
5.69922
DD
geographic location (longitude)
Ixodes ricinus
isolation_source
planted forest
local environmental context
tick metagenome
metagenomic source
Rickettsia helvetica
organism
Comparative genomics of pathogenic Rickettsial symbionts in ticks
project name
ERS17138682
sample derived from
Rickettsia helvetica
scientific_name
Whole genome
taxonomic identity marker
Rickettsia helvetica Ir_f16 MAG
title