PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2024-07-10
ENA first public
ERC000047
ENA-CHECKLIST
Portland State University
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS20569987
SRA accession
a149c27a-3059-402c-96b3-d53ba1ea6670
Submitter Id
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly quality
metaMDBG (version 0.3)
assembly software
PORTLAND STATE UNIVERSITY
barcoding center
coverage; graph
binning parameters
MetaBat (version 2.15); DASTOOL (version 1.1.5)
binning software
aquatic biome
broad-scale environmental context
NOT COLLECTED
collected_by
Kamo Aquarium | Tsuruoka | Japan
collecting institution
2021-10-17
collection date
99.94
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
0.0
%
contamination score
adult jellyfish tissue
environmental medium
Japan
geographic location (country and/or sea)
not collected
DD
geographic location (latitude)
not collected
DD
geographic location (longitude)
Tsuruoka | Kamo Aquarium
geographic location (region and locality)
NOT COLLECTED
habitat
adult
host life stage
Mastigias papua
host scientific name
not collected
host sex
596313
host taxid
IKEDA SHUHEI
identified_by
Kamo Aquarium | Tsuruoka | Japan
identifier_affiliation
metagenome-assembled genome
investigation type
Jellyfish: Mastigias papua
isolation_source
marine biome
local environmental context
jellyfish metagenome
metagenomic source
56
number of standard tRNAs extracted
Rhodococcus qingshengii
organism
WHOLE ORGANISM
organism part
2016-08-13
original collection date
NOT COLLECTED
original collection location
ASG
project name
NOT COLLECTED
sample collection method
SAMEA115829468
sample derived from
Rhodococcus qingshengii
scientific_name
Pacbio Sequel II
sequencing method
PORT0000203
specimen_id
KMP＿D
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
ani_screen
taxonomic identity marker
a149c27a-3059-402c-96b3-d53ba1ea6670-asg-bin.1
title
jsMasPapu4.Rhodococcus_qingshengii_1
tolid