PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2024-07-10
ENA first public
ERC000050
ENA-CHECKLIST
Portland State University
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS20569986
SRA accession
8a1fff53-0a57-4454-a450-f401e3cd9975
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG (version 0.3)
assembly software
PORTLAND STATE UNIVERSITY
barcoding center
coverage; graph
binning parameters
MetaBat (version 2.15); DASTOOL (version 1.1.5)
binning software
aquatic biome
broad-scale environmental context
NOT COLLECTED
collected_by
Kamo Aquarium | Tsuruoka | Japan
collecting institution
2021-10-17
collection date
56.9
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
0.73
%
contamination score
adult jellyfish tissue
environmental medium
Japan
geographic location (country and/or sea)
not collected
DD
geographic location (latitude)
not collected
DD
geographic location (longitude)
Tsuruoka | Kamo Aquarium
geographic location (region and locality)
NOT COLLECTED
habitat
adult
host life stage
Mastigias papua
host scientific name
not collected
host sex
596313
host taxid
IKEDA SHUHEI
identified_by
Kamo Aquarium | Tsuruoka | Japan
identifier_affiliation
metagenome-assembled genome
investigation type
Jellyfish: Mastigias papua
isolation_source
marine biome
local environmental context
jellyfish metagenome
metagenomic source
30
number of standard tRNAs extracted
Pararhizobium sp.
organism
WHOLE ORGANISM
organism part
2016-08-13
original collection date
NOT COLLECTED
original collection location
ASG
project name
NOT COLLECTED
sample collection method
SAMEA115829468
sample derived from
Pararhizobium sp.
scientific_name
Pacbio Sequel II
sequencing method
PORT0000203
specimen_id
KMP＿D
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
ani_screen
taxonomic identity marker
8a1fff53-0a57-4454-a450-f401e3cd9975-asg-bin.63
title
jsMasPapu4.Pararhizobium_sp_1
tolid